| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0973 |
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| Symbol | |
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| ID | 4923520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1117707 |
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| End bp | 1118807 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162505 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001093103 |
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| Protein GI | 127511906 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0429024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT TAAAGAAAAT GACAACACTC GCTCTGGTCA CCGCCGGGGT ATTTACAAGC
TCTGTCGTCA GTGCTGAAGA GGTGGTTAGG GTCTATAACT GGTCTGATTA TATCGCCGAA
GACACCTTGG CTAATTTCGA GAAAGAGACA GGCATCAAGG TGATCTACGA TGTGTTCGAC
AGCAACGAAG TGGTCGAGGC CAAGTTGCTA TCGGGTCGTT CAGGCTATGA TATCGTGGTG
CCGTCAAACA ACTTCCTGGC TAAGCAGATC AAGGCGGGCG CCTTCCAGAA GTTGGATCAG
TCACAGCTGA CCAACCACAA GAACCTTAAT CCTGAGCTGA TGAAGCAGCT TGAAACTGCC
GATCCACGTA ACGAGCACGC CGTGCCTTAT CTGTGGGGCA CCACAGGCAT AGGTTACAAC
GAGGCCAAGG TGAAGCAGGT ACTGGGTGAA GACGCGCCGG TCGATTCTTT GGAGCTGATC
TTCAATCCTA AGTATGCCGA GAAGATTGCT AAGTGTGGTT TCTCACTGCT GGACAGCGCC
GACGAGATGC TGCCGATGGC GATGATCTAC CTGGGGCTGG ATCCTAACAG CACTAAGAGT
GAAGACTACG CCAAGGCGGG TGAGGTGATG GCGAAGATCC GTCCCTTCGT GACCTATTTC
CACTCATCAC GTTACATTAC CGATCTGGCC AACGGCGACA TCTGTGTGGC ATTCGGTTAC
TCGGGTGACG TTTTCCAGGC CGCCGCGCGC GCCGAAGAGG CTGAGAATGG TAATGTGATC
GGCTATGCCA TCCCGAAAGA GGGTTCTAAC CTTTGGTTCG ATATGTTGGC GATTCCTGCC
GATGCCAAGA ACGTGAAGAA CGCTCACACC TTTATCAACT ACCTGCTGCG CCCAGAGGTG
ATTGCCCCTA TCACTAACTA TGTGGCGTAC GCTAACCCTA ACGTGCCGGC CCAGGAGCTG
GTGGATGAAG AGATCCGTAA CGACGCGGCT ATCTATCCAA CCCCTGAAGT GCTGTCACGT
CTCTATGTGG CCGATGTACG TCCGATGAAG GCCCAGCGCG CCATGACTCG CGTATGGACC
AAAGTCAAAT CTGGCATGTA A
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| Protein sequence | MKLLKKMTTL ALVTAGVFTS SVVSAEEVVR VYNWSDYIAE DTLANFEKET GIKVIYDVFD
SNEVVEAKLL SGRSGYDIVV PSNNFLAKQI KAGAFQKLDQ SQLTNHKNLN PELMKQLETA
DPRNEHAVPY LWGTTGIGYN EAKVKQVLGE DAPVDSLELI FNPKYAEKIA KCGFSLLDSA
DEMLPMAMIY LGLDPNSTKS EDYAKAGEVM AKIRPFVTYF HSSRYITDLA NGDICVAFGY
SGDVFQAAAR AEEAENGNVI GYAIPKEGSN LWFDMLAIPA DAKNVKNAHT FINYLLRPEV
IAPITNYVAY ANPNVPAQEL VDEEIRNDAA IYPTPEVLSR LYVADVRPMK AQRAMTRVWT
KVKSGM
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