| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0972 |
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| Symbol | |
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| ID | 4923474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1116079 |
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| End bp | 1117428 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162504 |
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| Product | glutamate--ammonia ligase |
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| Protein accession | YP_001093102 |
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| Protein GI | 127511905 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0174] Glutamine synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00809428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGT TAATCGATTA TTTGAAAGCC AATAAGATCA CTGAGGTCGA GTGTGTCATC
AGCGATATGA CGGGGATTGC CCGCGGCAAG ATTGCGCCGG TCGATAAGTT TATCGACGAG
AAGGGGATGC GTCTGCCCGA GAGTGTGCTG CTGCAGACGG TGACCGGCGA CTATGTGGAT
GACGACCTGT ACGACAGCCT GCTGGACAAG GCGGATATCG ACTTTGTCTG TGTGCCCGAT
GAAAATGCGG TGTTCATGTT GCCCTGGACG GTCGAGGCCA CCGCCCAGGT GATCCACGAC
ACCTTCGATA AGATGGGTAA CCCCATAGAG TTGTCGCCCC GTAACCTACT GAAGAAGGTG
CTCAAGCTCT ATGAAGATAA GGGCTGGAAG CCGGTGATCG CCCCCGAGAT GGAGTTCTAT
CTGACCCATA GAAACTCAGA TCCCGATATG CCATTGATTC CACCAGTTGG CCGCAGTGGC
CGCAAGGAAT CGGGCCGTCA GTCGTTTTCT ATCGACGCCG CCAACGAGTA TGACCCGCTG
TTCGAAGATA TGTATGACTG GTGCGAGGCC CAGGGACTGG ATATCGATAC CCTGATCCAC
GAAGAGGGCA CGGCCCAGAT GGAGATCAAC TTCAGCCATG GTGATGCCCT GTCGCTGGCG
GATCAGGTGT TTGTGTTTAA GCGTACCCTG CGTGAGGCGG CGCTCAAGCA TGACGTTTGC
GCCACCTTTA TGGCCAAGCC AGTCACCGAC GAGCCGGGCA GCGCCATGCA TATTCACCAG
AGTGTGGTGG ATATCAAGAC GGGCAAGAAC ATCTTTACCA ATGAGGACGG CACGAAAAGT
GCTAAGTTCC TGTGCTACAT AGGCGGCCTG CAGAAGTATA TTCCCGAGTT GTTACCGCTG
ATGGCCCCGA ACGTCAACTC CTTCAGACGA TTCCTGCCGG GCACCTCTGC GCCGGTTAAC
CTGGAGTGGG GCGATGAGAA CCGCACCTGT GGTCTGCGGA TCCCCGAGTC GTCACCTCAG
AACCGTCGTA TCGAGAACCG TATCGCCGGT GCCGATGCCA ACAGCTACCT GGCCATCGCC
GCTACTCTGT TGTGTGGTTA CATGGGCATG GTGGAAGATG TGAAACCATC GACGCCGGTA
CAGGGACGCG CTAACGAGAA TCGTCAGGGG ATCAGCCTGC CGCTGACGCT GGAAGAGGCG
CTGGCGGTGA TGTCGGAAAG TTCGGCGGTG AGGGAATATC TGGGTGACAC CTTCACCTCA
GGTTATATCG CGGTGAAGCA GGCGGATCTG GAAAACTTCC GCCGGGTGAT CAGCTCATGG
GAACGTGAGT TCCTGCTGCT GACCGTTTAG
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| Protein sequence | MKKLIDYLKA NKITEVECVI SDMTGIARGK IAPVDKFIDE KGMRLPESVL LQTVTGDYVD
DDLYDSLLDK ADIDFVCVPD ENAVFMLPWT VEATAQVIHD TFDKMGNPIE LSPRNLLKKV
LKLYEDKGWK PVIAPEMEFY LTHRNSDPDM PLIPPVGRSG RKESGRQSFS IDAANEYDPL
FEDMYDWCEA QGLDIDTLIH EEGTAQMEIN FSHGDALSLA DQVFVFKRTL REAALKHDVC
ATFMAKPVTD EPGSAMHIHQ SVVDIKTGKN IFTNEDGTKS AKFLCYIGGL QKYIPELLPL
MAPNVNSFRR FLPGTSAPVN LEWGDENRTC GLRIPESSPQ NRRIENRIAG ADANSYLAIA
ATLLCGYMGM VEDVKPSTPV QGRANENRQG ISLPLTLEEA LAVMSESSAV REYLGDTFTS
GYIAVKQADL ENFRRVISSW EREFLLLTV
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