| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0936 |
|---|
| Symbol | |
|---|
| ID | 4920607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1072806 |
|---|
| End bp | 1076561 |
|---|
| Gene Length | 3756 bp |
|---|
| Protein Length | 1251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162468 |
|---|
| Product | peptidase S8/S53 subtilisin kexin sedolisin |
|---|
| Protein accession | YP_001093066 |
|---|
| Protein GI | 127511869 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA CCAAATGCAC CCTAGCATTG TGCGTCTCGA CCGCCATTCT CTCCAGCGCC
CTACAGGCCA AGACAGAATC GATCTCAGCC TTTGGCGTGG AGCAGGCGCA GACCAGGGCG
ACCTACACTT TCTCACTGGC GCAGACAGAC AAAGCCGCTA GCCAGCTCAG CGCCCAGGAT
GCCCTCAACC AACAGGCGCA GCTACTTAAG CAGATCCAGG CCATAGACCC ACAGGCACGC
CTGGTAGGCA GCAGCCATCT ACTGGCCAAT ACCGTCACCG TCGAGGTACA GCAAGATGCG
CTGGCCAAGA TCCGTGCACT GGATGCCATC GCCCAAACCT TTCACGGCGA GCAGCTCTTT
AGCGAGCAGA CCTCGATAGC CCAAGCTCGC TCACGCATCG CCAGCCAAGA AGCCAGCCCC
CTCAGCGAAC AAGCTAACGA GCTGATGAGC CCCTACACAG GTAAAGAGAC CGCAGGCACA
GGCGTCAGCA TCGCCATCAT CTCTACCGGT ATCGACTATA CCCTGCCAAT CTTCGGCGGC
TCTGGCGTCT ATGGTGAAGA CAATGACCCC GAAACGCCGC CACCGGCAGG CAGCTACCTG
GAAGCTCTTG AAAATGGGGC CATCGAGTAC GCAGGTTTCC CCACTGATGT CGTGGCCGGG
GGCTGGGACT TTGTCAGCGA AAACTATGGC AACGATGCCA ACCCGATAGA TCAGAACCTA
GAATATGAAG CCTATAATGG CTGGGTCTAC CCCACAGGCA CGGGCACTGA GATCGCCAGT
ATAGTGCATC AGCTCGCACC AGGCGCCAAG CTACACGCTT ACAAGGTGTA TAACGTGATG
GAGAAGAACG GCAGGGTATC GGCCTCTGGC CCCAGCCTTA ACTCCATTGT CTCGGCCTTC
GAACATGCCA TGGATCCTAA CCAGGATGGC GACACTAGCG ATCATCTGGA TATCGCCCTG
ATCGACGCGG CGGGCGCGGG CGCCTTCTTC GACATCGACG GCAACGCCTC CCCTAGCCTG
CTGCAGATGC TGATCGAACG CGTCTCAGCT CAAGGCATGA CAGTGGTGAC CCACGCCGGT
AACCTGGGCC TCTACTCGCT ATTTGGCGAT GCCGAGGCCA AACATCGCAA CTGGATCTCC
AGCGAAGGTA GCGCCACTTC GGCCATTACC GTCGGCGCCG TCAACCATGG CGAGGATGGC
GAGAGCAAGG TCATTCCCGA CTGGGCACCT ATGGGCCCGG TGCGCGGCTC CCAGGCCCTT
AAGCCTGAGA TAGTTACCTT TACCGATGAG CAGCCAGTCG CCAAGATCTC TAACCCAGAT
GAGACCGCCG CCAAGCTGGG GAGTCGCAGC GGCGCCTTCA CAGGTGCGGC GCGCATCGCG
GCGGCGGCAG CCGTGATCAA GAGCCAGCAC CCAGGCTTCG GTCCCGCCGA GATCAAGGCC
CTGCTGGCCA ATACCGCCGA CATCTCTTCA ATCCTGGAGA GTGACGGCGT GACCCCAGCA
GAGCTTTATG CTATGGGCCA TGGTGTCGAA AACCTCACCA ACGCCATCGC CTCGCCTATC
GTTGCCTGGG AAACCAGCAG CAACCAGCCC TATGTGCAGT TTGGCATGCA TGAGGTCGCC
CAAAGCAAGA CGCTGCATAA GCGCATAACC CTGAGAAACC TCTCAGATAC GGCGCAAACC
TATCAACTCT CCTACAAGAT GACCGGGGAC AAGGCCGGCT ACCAGGCGCT GACCATGAGC
CTGCCCGAGA GCGTGAACAT TCCGGCGCAC TCGAGCGTGA TCCTGCCGCT CACCCTGACC
ATAACGGGCG ACAAGCTGCC CCAGTGGCCA CTGATGGGTA CAGGCGACCA TGTGGATGCC
AACCTCAAGG CCACCGAGCT TAACGGCTAC ATCAGCCTGA GCGCAGATGA TCAGCCCGAG
ATCAACCTGG GCTGGATGGT GAAGGCGCGC AGCAACACCA GCATCACTAA GAAGCCCAAC
GCCATCGAGT ACCCTAACTA CCTGGGCTAT AACCCAGATC TGGGCAAGAC AGAATGGGAG
CACCTGAATT GGGGCCGCGA GCTCTATCCA GATACCGAAT CTGGCTCGCT GAACTATCAG
GGCTATGTGG CGTCGTTCGT TAACGAGTCG AACACAGCAA CTACTTACCA GGCCTACCCA
TTGCTGCTGC AAAACCCGAC CCTGCCCGAG AAGCTACAGG GGCTGAAGGG GCACATGATC
AAGGCGGTCG GTGGTGCTGT CTATGATGAC GCCCAGTGCA GTGTGACCGG CAAAAAACTG
AACATCGCCG TCAGCCTGTT TCAACCAGCG GATGTGGCCC TGCCCAACTT CTTCGAACGT
GGACCGCGCC TGTTTACCTA TGACCTTTTC TATGAGGCCA CGGTTAAGGA GAACGGCTGG
GACAAGAGCT TCGAAGGCGC CTACATCTAT GATGACGCAC AGAAGGTGAA CCAACCCTTC
GTCGCCCTCA ACGACAAGGG ACAACCCACC ACCTATGTGA TCGATCTCAA CCTGCCTTAC
GACTATTCAA ACCCTACGGG CCGCTATAAG GAATCGACGC TGCCGACCTT CTTTGCCAAC
AACGGGAGAA ATATCGTGTC GCAGGTCTGT CTGGAAGATA TGTTCCACCA CGAGCTGGAT
AGTGTCGAGG ATTTCGACCA AAACTTTGGC TTCCATATCG AAACCGACCG CCACACGGGC
AAGGCGCAAT ATGAGCCTAT CACTCAGTTC AACCCCATCA AGGGCGGCAG CTACACCACG
GAAGAATCTT GCTACCTAGA CTGGTTTAGC GGCGAAGAGG TGTGCTCTGA AACCGTATTC
GATCGCTCGC TCAAGATAGG TTTCGCCGGT AAGGAGGACG ACCAGGTGGT CGGCGATCTG
GCCTTCGAGC AGACCTATAC GGCCCAGCCT GGTGAGGAAG TCTATATCGC CTCTGTGGGC
ACCTCTGAGC TAGGTGGTTT TGGCAGGCTA CCCGAGCCTA AGGGCTTCAT GGTGGTGAGC
CTTAACGACG ACTTCATGCA AATAGGCTAC AACGCCCTGG TGGACGATGA CGGTTCGGCA
ATTGCAAAAG CCAAAGCCGG ACAGGTGTTT AGCGTAGAGG AAAATGCTGA GGTTGGCACA
GTCGTCGGCG AGATAGCCCT CGATACCCAG GGCTTCTTTA CCTCGGGCTC GAGTTCATAT
ACGGCCTTCG AACTACATAT TACCAATACC CTTGTCGGTA CACCGTTTGC CATCAATCAG
GAGACCTTCG AGCTCTATGT GGCCAATCCT GAGGCCTTGG ATTTCGAGAA CAACCGCGAG
TTCGAAGTCA AGATCACGTC TCAGCGCGGG AACAGCATAG GCGAAACCGA GACCCTGACC
GTCATGGTAC AGGACATCAA TGATATGGCG CCCGAGCTGA ATGAAGCAGT TGCAGCATCA
CTGAAAGTCG CACCACTGAG CTTCAAGTCT GGCTCATCAG CCAGCTTCAA CCTGGATGTG
AGCGGCCTGT TCACCGACAT GGAAGGCAAC GGCCTGAGCT ACCAGGTAGA AGGCAGCAGC
TTCGCCGCCC TGAGCATCTC TGGCACTCAG ATAACCGGCC AGGTCGACAG CGAAGGCAGT
CATCCTCTGA CCATCATCGC CTCCGACGGT GAGCATGAGG TTAGCCACAC GCTGCAGATT
GAGGCGAGCC AGGCACAGGA AAGCGACGAT GGTGGCGCCC TGGGCTGGCT ATCGCTACTG
CTGGGACTGA CGGCCATGGT TCGTCGCCGC CGCTAG
|
|---|
| Protein sequence | MKFTKCTLAL CVSTAILSSA LQAKTESISA FGVEQAQTRA TYTFSLAQTD KAASQLSAQD
ALNQQAQLLK QIQAIDPQAR LVGSSHLLAN TVTVEVQQDA LAKIRALDAI AQTFHGEQLF
SEQTSIAQAR SRIASQEASP LSEQANELMS PYTGKETAGT GVSIAIISTG IDYTLPIFGG
SGVYGEDNDP ETPPPAGSYL EALENGAIEY AGFPTDVVAG GWDFVSENYG NDANPIDQNL
EYEAYNGWVY PTGTGTEIAS IVHQLAPGAK LHAYKVYNVM EKNGRVSASG PSLNSIVSAF
EHAMDPNQDG DTSDHLDIAL IDAAGAGAFF DIDGNASPSL LQMLIERVSA QGMTVVTHAG
NLGLYSLFGD AEAKHRNWIS SEGSATSAIT VGAVNHGEDG ESKVIPDWAP MGPVRGSQAL
KPEIVTFTDE QPVAKISNPD ETAAKLGSRS GAFTGAARIA AAAAVIKSQH PGFGPAEIKA
LLANTADISS ILESDGVTPA ELYAMGHGVE NLTNAIASPI VAWETSSNQP YVQFGMHEVA
QSKTLHKRIT LRNLSDTAQT YQLSYKMTGD KAGYQALTMS LPESVNIPAH SSVILPLTLT
ITGDKLPQWP LMGTGDHVDA NLKATELNGY ISLSADDQPE INLGWMVKAR SNTSITKKPN
AIEYPNYLGY NPDLGKTEWE HLNWGRELYP DTESGSLNYQ GYVASFVNES NTATTYQAYP
LLLQNPTLPE KLQGLKGHMI KAVGGAVYDD AQCSVTGKKL NIAVSLFQPA DVALPNFFER
GPRLFTYDLF YEATVKENGW DKSFEGAYIY DDAQKVNQPF VALNDKGQPT TYVIDLNLPY
DYSNPTGRYK ESTLPTFFAN NGRNIVSQVC LEDMFHHELD SVEDFDQNFG FHIETDRHTG
KAQYEPITQF NPIKGGSYTT EESCYLDWFS GEEVCSETVF DRSLKIGFAG KEDDQVVGDL
AFEQTYTAQP GEEVYIASVG TSELGGFGRL PEPKGFMVVS LNDDFMQIGY NALVDDDGSA
IAKAKAGQVF SVEENAEVGT VVGEIALDTQ GFFTSGSSSY TAFELHITNT LVGTPFAINQ
ETFELYVANP EALDFENNRE FEVKITSQRG NSIGETETLT VMVQDINDMA PELNEAVAAS
LKVAPLSFKS GSSASFNLDV SGLFTDMEGN GLSYQVEGSS FAALSISGTQ ITGQVDSEGS
HPLTIIASDG EHEVSHTLQI EASQAQESDD GGALGWLSLL LGLTAMVRRR R
|
|---|
| |