Gene Shew_0935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0935 
Symbol 
ID4920570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1069130 
End bp1072729 
Gene Length3600 bp 
Protein Length1199 aa 
Translation table11 
GC content58% 
IMG OID640162467 
Productpeptidase S8/S53 subtilisin kexin sedolisin 
Protein accessionYP_001093065 
Protein GI127511868 
COG category 
COG ID 
TIGRFAM ID[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.755252 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAA GTCGTAGAAA TTTGTTACTG AGTGCACTCT CGGTTGCCAT CGCCAGCGCT 
TGCTATGCCA ACCCTGGCGC CGCAAGCTTT AGCGATGATA CCAAGCCACT GCAAACCATT
ATTCCCGGCC AAGAAAAACT CAAACTCGAA CGCGCCGATA AACAACGCAG CGACGGCATG
TACTTCGTCC GCTTCAAGGA AGCCCCGGTC GCCAGCTATG ATGGCTCGCT GGCGGGCTTT
GCCGCCACCA ATATTCAAGT CAACCAGTCA AACAAGCAGG CATCTGGTCT GCTGAACAGC
CAGTCTAAGG CCAGCCTGCA ATACAGAGGC TACCTGAAAC AGCAGCAAGC CAAGATCAAG
CAGAGACTAA ACGGCAAACT CAAACGTATT CTGACCCCGA CCCAGGAATA CCAGCTGATC
GTCAACGCCA TGGCGGTAAA GCTTAAGCCG GGTGAGGCCG ACATCATAGC CAAAGACCCT
GAGGTTTTGA GTGTCGAGCC CATAGGCCTG CACTTTATTC AAACCTCCAC CGGGCCCGAA
TTTATCGGCG CCAAGCAGGT CTGGCAGGGC GATGAAATCG TCGAGGCTAC TAAGGGGGAA
GGGGTTATCG TTGGCGTGAT GGACACAGGG ATCAACGCCA ATCACCCCTC CTTTGCTGAG
GTGGGCGCCG ATGGCTACCA GCACAAGAAC CCCCTAGGCG ACGGCCAGTA CCTGGGGGAT
TGCCAGCAGT ACAGTCAGTT TTGTAACGGC AAACTCATAG GCATCATCAG CTATCCCGAG
CTTATCCAAT ATCGTCAGGA CACGGCCGAC AGCCTGGACG ATCCCGCCTA TGAGGATCTC
GCCAACAAGG TCAAGGTGGG CTATGACTTC AACGGACACG GCTCCCACGT GGCCTCTACC
GCGTCGGGCA ATATACTGCA CGACGTCAAC TTCTATCTGC AGGTGCAGGA GGAGGATGGC
ACTATCATCG CCGAAAAGAG CGCCTTCGAA TTTGACGCCA TCAGCGGCGT AGCTCCCCAT
GCCAACTTGG TTTCTTACCA AGTGTGTGAC GATGCCGGCT CCTGTTATCC GGAATTTACC
CTCAAGGCGA TTGAACATGC CATAGAAAAC GGGGTACAGG TGCTCAACTA CTCTGTGGGC
GGCTCGGCCA AAGACCCTTG GTCCTCCATC GACGCCGAAG CCTTCCTCAA CGCCCGCGAG
GCGGGTATTC ATGTGGCGGT GGCCGCGGGT AATGCGGGCC CAAGCGCCAG CACAATAGGT
TCGCCGGGAA ACGCCCCCTG GGTGACGACG GTCGCCGCCT ACACCCACGA TCTCGAGTTT
AAACAGAAAT CCCTCACCAA CATGAATGGC GGCGAGACGC CACCCGCCGA CATGATGGGC
TTTGGCGTGA CCAAAGGGGT GAGCGGCAAG GTGGTTCTGG CGGCCAGCGT CAATTCCGAC
AACGCCCAGT GCACCGACCC TTTCGAGGCT GGCAGCTTCG ATGGTGAGAT CGTCGTCTGT
GAACGCGGAA CCAACGCGCG GGTGCGCAAG GGGATCAATG TTAAAGAAGG CGGCGCCGGC
GGCATGATCT TGATAAACAT GCCTGATGGT GTAGATTCGC TGCACAATGA CAACCATGTT
CTGCCTGCCA TTCAGCTTAA TGCCGCCGAT GGCGAGCGTC TGACCCAGTG GCTGGCCAGC
GGTGAAGGTC ACCAGGCGAC AATTGAAGCC TCAGAAACCA CCAGAAACGC CAGCCTGGGT
GATATCGCCG GGGTCTTCAC CTCTCGCGGG CCTAACCTGC CCTATCCCAA CATCTTCTCG
CCAGATATCG CCGCGCCCGG GGTCGATATC TACGCCGCCA ACGCCGAAGA CAGGCTGTTC
GAGGGGCAGA TTGGCCATAT TCCATTCGCC AGCTTGTCCG GCACCTCTAT GGCCACGCCC
CATGTGACCG GCGCCTATGC CCTGCTTAAG GCCGCGCATC CAGACTGGAC ACCGGCTCAG
GCGCAATCGG CCTTCATGAG CACCGCCCAT CAGACCACCT ACAAGGACGA TGACTATGAT
GGCACCCTAG AACGCTCCGA CTTCTTCGAC CAGGGCGCGG GCAGCCTGCG TATCAACCAG
GCATTAAAGG CAGGCCTGCT GCTGGATATC GACAAGGCTG GATATCTGGC GGCTAATCCT
GAGATGGGCG GCGATCCCAG TGCGCTCAAC ACCAGCTCCA TGGTGCAAAA CCAGTGTATC
TCCAACTGCA GCTGGACCCG CACCGTCACC GCGACCCAGG CCAGCAGCTG GAGCGCCGAG
TATGAATATC TCAATCCAGG CTTCACCCTG GAGGTGACCC CATCGAGCTT CTCCCTCAAC
GCGGGGGAAT CTCAGGTGCT CACCATCAAG GCGACCGCCA ACATTAACCT GGTGGATGAG
TGGGTGCACG GCTACATCAA GCTTAACAAT GCCGATACCA GCATGAGCGA CACCCACCTG
CAGGCCACCA TAGGCTTCAA GGCCGGCCAG GTGGCCGAGG AAGTCAGCGC CGAGATGAAC
AATGTCGACA ACCAGCTGGT GATCGAAGAT ATCTTCACCT CGGGCAGTAA TGCACTCCAG
GTCAAGGGCT TCGGCCTGTA TAAGGCGCAG TCCTTCACTG GCAGCGCGAT TGGCTCCTCT
AACGATGCCG AGCGTGGCAG CCCGCACTCG AATCCTGAGG TGATCTTCAG CGTGCCGACC
GTGGTCAAGC CCTACACCAA ACGCCTGGTC GTAGAGATAA CCGACACCAC CTCACCCGAC
ATGGATCTCT ATGTCGGCAT AGATGAGAAC GGTGACGGCA TGCCTGATGC CTATGAGATG
TACTATTCAC TGCTCTGTCT GAGCGGCGAG GTAGACTCTA AGGAGCGCTG CATCCTGGAA
AACCCGCCAA CCGGCAACTA TTGGATATTT GCCCACAACT ATGAGGGCAG GGTCGAGGAT
GAAGCCGACG AGGTGACCTT GGAGATCACC CATGTGAACT ACAGCAATCA GGCGAGTTTC
GACATCACGG CGCCAAGTCA GGTAGCACAG GATGAGCGCT TCGACGTGAG CCTGTCGGTC
AACGGCTATC TGGATGACAG CCTGAGTCTG CAGCCGCTTG AAGCCGGCGA GACCTACTAT
GGCCTGCTCG AGATGGGCAC CACAAGCGAG CTTAAGCGCA ACATAGGCGC CACCCTGATC
AAGGTAAAAG GCCTAGAGCC GGTTGAGGTG CCGCAAAACA CCGCGCCCGT GCTGGCCAAT
CCGATTGCCG ACCTTCAGAC CCAGCTAAGC GAACAGGGCA GCGCAGTGGT CAGCCTAGAT
CTCAGCCAGG TCTTTAGCGA CGCCGAGGGC GATACCCTCA CGCTATCGGC GACGGGTGTC
GAAGGGATAA CCTTAGATGG TACTCAGCTT GAGATGAACT TTACCGCCAG CGGCGAATAC
CCAATTGTCA TCTCGGCCAG CGACGGGGAA CTCAGCACAG AGACGCAATT TACCGTCACT
GTGACAGCGG CGCCGATAGT ACCTGTCGAG CCACCGAGTG AATCGAGTGG CGGCGGCAGC
CTAGGTTACT TCACCCTGCT ACTGCTTGGT CTCTCAGGCC TTAGACGCCG CCAGCGCTAA
 
Protein sequence
MKSSRRNLLL SALSVAIASA CYANPGAASF SDDTKPLQTI IPGQEKLKLE RADKQRSDGM 
YFVRFKEAPV ASYDGSLAGF AATNIQVNQS NKQASGLLNS QSKASLQYRG YLKQQQAKIK
QRLNGKLKRI LTPTQEYQLI VNAMAVKLKP GEADIIAKDP EVLSVEPIGL HFIQTSTGPE
FIGAKQVWQG DEIVEATKGE GVIVGVMDTG INANHPSFAE VGADGYQHKN PLGDGQYLGD
CQQYSQFCNG KLIGIISYPE LIQYRQDTAD SLDDPAYEDL ANKVKVGYDF NGHGSHVAST
ASGNILHDVN FYLQVQEEDG TIIAEKSAFE FDAISGVAPH ANLVSYQVCD DAGSCYPEFT
LKAIEHAIEN GVQVLNYSVG GSAKDPWSSI DAEAFLNARE AGIHVAVAAG NAGPSASTIG
SPGNAPWVTT VAAYTHDLEF KQKSLTNMNG GETPPADMMG FGVTKGVSGK VVLAASVNSD
NAQCTDPFEA GSFDGEIVVC ERGTNARVRK GINVKEGGAG GMILINMPDG VDSLHNDNHV
LPAIQLNAAD GERLTQWLAS GEGHQATIEA SETTRNASLG DIAGVFTSRG PNLPYPNIFS
PDIAAPGVDI YAANAEDRLF EGQIGHIPFA SLSGTSMATP HVTGAYALLK AAHPDWTPAQ
AQSAFMSTAH QTTYKDDDYD GTLERSDFFD QGAGSLRINQ ALKAGLLLDI DKAGYLAANP
EMGGDPSALN TSSMVQNQCI SNCSWTRTVT ATQASSWSAE YEYLNPGFTL EVTPSSFSLN
AGESQVLTIK ATANINLVDE WVHGYIKLNN ADTSMSDTHL QATIGFKAGQ VAEEVSAEMN
NVDNQLVIED IFTSGSNALQ VKGFGLYKAQ SFTGSAIGSS NDAERGSPHS NPEVIFSVPT
VVKPYTKRLV VEITDTTSPD MDLYVGIDEN GDGMPDAYEM YYSLLCLSGE VDSKERCILE
NPPTGNYWIF AHNYEGRVED EADEVTLEIT HVNYSNQASF DITAPSQVAQ DERFDVSLSV
NGYLDDSLSL QPLEAGETYY GLLEMGTTSE LKRNIGATLI KVKGLEPVEV PQNTAPVLAN
PIADLQTQLS EQGSAVVSLD LSQVFSDAEG DTLTLSATGV EGITLDGTQL EMNFTASGEY
PIVISASDGE LSTETQFTVT VTAAPIVPVE PPSESSGGGS LGYFTLLLLG LSGLRRRQR