Gene Shew_0932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0932 
Symbol 
ID4920638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1065921 
End bp1067009 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content58% 
IMG OID640162464 
Productradical SAM domain-containing protein 
Protein accessionYP_001093062 
Protein GI127511865 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1180] Pyruvate-formate lyase-activating enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAACTG CACCACCGGC ATACTTTCCG ACCCAATATT GGCATGCCCT GGATGACGGG 
CGGGTGTGCT GCGACGTCTG CCCGCGCAAG TGCACATTGC GCGAGGGTAA ACGCGGCGCC
TGCTTCGTGC GCATGCACCA TCAAGGCGAG ATAGTGCTGA CCAGCTATGG TCGCTCCTCG
GGTTTCTGTA TCGACCCTAT CGAGAAGAAG CCGCTAAACC ATTTCTACCC CGGCTCAAGC
GTGCTGAGTT TCGGCACCGC CGGGTGCAAC CTGAGCTGTC TCTTCTGTCA AAACTGGGAC
ATGAGTAAGT CGCGCCAGAT GGATACCCTG TGTGACAGCG CCATGCCAGA CGAGCTGGCG
GCCACCGCCC GTCGCCATGG CTGCAAGAGC ATCGCCTTTA CCTATAACGA TCCTGTGGTG
TTTATGGAAT ACGCCATCGA TGCCGCCCAG GCGGCCCATG AACTTGGGCT AAAGAGCGTG
GCGGTGAGCG CGGGCTATAT CTGTGAGGCG CCGAGGATTG AGTTTTATCG GTATATGGAC
GCGGCCAATA TCGACCTTAA GGCCTTTAGC GAGTCGTTTT ATCACAAGAT CTGTCACGGC
CAGCTGCAAC CTGTGCTCGA GACCTTGCTC TATCTCAAGC ATGAGACCCA GGTATGGTTT
GAGATAACTA CATTGTTGAT CCCCGGCGAG AACGACAGCG ATGAGGAGCT CAATGCCATG
TGTCAGTGGC TGGTGGAAAA CCTGGGGCCA GATGTGCCGC TACATTTCAG CGCCTTTCAC
CCCGACTTTA AGCTGCTGGA CAGGCCGCCG ACACCGCTAA GCACGCTGCA ACGGGCGCGG
CGTATCGCCC TCAATCACGG CCTGCATTAT GTCTATTGCG GCAATGTGCA TGACCCAGAT
TCCGACGCCA CTTACTGCGC CAGCTGTCAC AAACGCCTGA TCGAGCGTGA CTGGTATCAG
CTCGGGCAAT ATGCGCTGGA TGAGCAGGGT ACCTGCCGAT ACTGCGGCGC GCCGCTGCCG
GGACGCTTTG CCAGGGTGCG GGAGGATTTC GGTGCACGGC GGATCGCGGT GCGGATCCAT
CGCGACTGA
 
Protein sequence
MLTAPPAYFP TQYWHALDDG RVCCDVCPRK CTLREGKRGA CFVRMHHQGE IVLTSYGRSS 
GFCIDPIEKK PLNHFYPGSS VLSFGTAGCN LSCLFCQNWD MSKSRQMDTL CDSAMPDELA
ATARRHGCKS IAFTYNDPVV FMEYAIDAAQ AAHELGLKSV AVSAGYICEA PRIEFYRYMD
AANIDLKAFS ESFYHKICHG QLQPVLETLL YLKHETQVWF EITTLLIPGE NDSDEELNAM
CQWLVENLGP DVPLHFSAFH PDFKLLDRPP TPLSTLQRAR RIALNHGLHY VYCGNVHDPD
SDATYCASCH KRLIERDWYQ LGQYALDEQG TCRYCGAPLP GRFARVREDF GARRIAVRIH
RD