Gene Shew_0924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0924 
Symbol 
ID4921268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1052477 
End bp1052938 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content52% 
IMG OID640162456 
ProductDNA polymerase III chi subunit, HolC 
Protein accessionYP_001093054 
Protein GI127511857 
COG category[L] Replication, recombination and repair 
COG ID[COG2927] DNA polymerase III, chi subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.722324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAACG CCTTGTTTTA CTTGATGCCA CAAGCCAGTT CTGCCGCAAC CAATGTTGCC 
AAGGCGGAGC AAGAGAGTGT CTATCTTTTC GCCTGCCGAC TCGCCGAGCA GGCGTATCGT
GGTCAACAGC TGGTGTATAT CCACTGCAAT GACCAGCAGC AGGCCTATGA AGTTGACGAA
ATTTTATGGC AATTTGAACC CAGCGCATTT GTGCCCCATA ACCTCAAGGG CGAAGGGCCG
ACGGGTGGCG CACCGGTGGA GATAGGCTTC GATAAATTGG GCCCCAATAA AAATCGTCAC
CTTCTGATTA ATCTTGCAGA CCAAGCGCCG CAATTTGCGG TAAACTTTGG CCAGATTATC
GACTTCGTTG CCAACGATGC TGCCATGAAA GCGACCGCGC GCGATCGTTA TCGCCAGTAT
CGCGAGTTAG GGATCCCCCT GACGACCCAA CAACCAAATT AA
 
Protein sequence
MPNALFYLMP QASSAATNVA KAEQESVYLF ACRLAEQAYR GQQLVYIHCN DQQQAYEVDE 
ILWQFEPSAF VPHNLKGEGP TGGAPVEIGF DKLGPNKNRH LLINLADQAP QFAVNFGQII
DFVANDAAMK ATARDRYRQY RELGIPLTTQ QPN