Gene Shew_0887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0887 
Symbol 
ID4920700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1007257 
End bp1008210 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content60% 
IMG OID640162420 
ProductD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 
Protein accessionYP_001093018 
Protein GI127511821 
COG category[H] Coenzyme transport and metabolism
[R] General function prediction only
[C] Energy production and conversion 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.245056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.881373 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAG TGGTACTCGA TGGTTACACC CTCAACCCTG GCGATCTCGA CTGGCAGCCC 
CTCGCGGCGC TGGGCGAGTT TCACTGCTTT GACAGAACCT CCCCGGCCGA ACTCCTGGAT
CGCGCTCAGG GGGCCCAGGT GCTGCTGACC AATAAGACTG TGCTCGACGC CGATGCGCTT
AGGGCACTGC CAGATCTTGA GTATATCGGC GTGCTCGCCA CTGGCACCAA CGTGGTGGAC
CTCAATGCCG CCCGCGAGCT TGGGATCAAG GTGACCAATG TGCCAGGCTA TGGCCCGGAT
GCGGTGGCCC AGATGGTGTT TGCCCATATT CTTCATCATA CCCAGCGATT GTCGGACCAT
CACAACGCCG TGGTGGCCGG GGCCTGGTCT CAGGCGCCAG ATTTCTGCTT TACCCTGGCG
CCGCTACAAT CCCTAAAAGG TAAGACCCTC GGCTTGGTGG GGTTTGGCGA CATAGGTCGG
CAGGTGGCTA ATATTGCGAA GGCGTTTCAG ATGCGGGTGC TGGTCAACAC GCCATCCATT
AAGCATGACC TCCCTGAGGG GGTCAGCTGG TGTGAGCGTG AGGCGCTCTT TGCCAGCGCC
GATATCATCT CACTGCACTG CCCGCTAACG CCGGATACCG AGAAGTTGAT TAACCGAGAG
CGGCTCAGCG CCATGAAGCC AAACGCCATC TTAATCAACA CGGCCAGGGG CGGTCTGGTG
GACGAGCAGG CCTTGGCCAA TGCCCTGGCT CAGGGGGAGA TTGCCGCCGC CGGGGTGGAT
GTGCTCTCTA GCGAGCCGCC ACAGGCTGAC AATCCGCTGC TGAGCGCACC TCATATCAGC
ATCAGCCCGC ATAATTCCTG GGCGACCAAG GAGGCACGCC AGCAACTGCT GACGATAGCG
GTCGATAACC TCAAGGGCTA TCTGGCGGGT CAGCCGATGA ACCTGGTGAA TTAA
 
Protein sequence
MKIVVLDGYT LNPGDLDWQP LAALGEFHCF DRTSPAELLD RAQGAQVLLT NKTVLDADAL 
RALPDLEYIG VLATGTNVVD LNAARELGIK VTNVPGYGPD AVAQMVFAHI LHHTQRLSDH
HNAVVAGAWS QAPDFCFTLA PLQSLKGKTL GLVGFGDIGR QVANIAKAFQ MRVLVNTPSI
KHDLPEGVSW CEREALFASA DIISLHCPLT PDTEKLINRE RLSAMKPNAI LINTARGGLV
DEQALANALA QGEIAAAGVD VLSSEPPQAD NPLLSAPHIS ISPHNSWATK EARQQLLTIA
VDNLKGYLAG QPMNLVN