Gene Shew_0873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0873 
Symbol 
ID4923693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp993312 
End bp993782 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content58% 
IMG OID640162406 
Producthypothetical protein 
Protein accessionYP_001093004 
Protein GI127511807 
COG category[S] Function unknown 
COG ID[COG3610] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0929072 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAGC TGCTGCTCAA GCTGCTAAAC GATGCGGCCT TCTCGGCTGT TCCTGCGGTG 
GGTTTCGCCA TGGTGTTCAA TGTGCCCAAA CGCTTCCTGC CATACTGCGC CCTGGCTGGC
GCCCTGGGCC ACAGCCTGCG CACCTTGCTG CTGCATTTCG GTATGCCGAT AGAGTGGTGT
ACCTTCGCCG CGGCGGCCTT GGTCGGGGTG TTAACCATAG GCTTTGCCAA GAAACATCTG
GCACCGCCGC TGATGTACGC TGTGGCGGCG ATCATCCCAA TGATCCCGGG AACCTATGCC
TACAACACAG TGATTGCCTT GGTGCAGCTG TCTGCCCAGT CTGAGGTGAG CCCAGAGCTG
ACCGCCGAGG TGATAAGCAA TGGCTTGAAG ACCATCTTCA TCTTAGGGGC GTTATCTGTC
GGACTCGCCA TGCCCAGTCT GCTCTATTTT CGTACCCGCC CAGTGATCTA A
 
Protein sequence
MMELLLKLLN DAAFSAVPAV GFAMVFNVPK RFLPYCALAG ALGHSLRTLL LHFGMPIEWC 
TFAAAALVGV LTIGFAKKHL APPLMYAVAA IIPMIPGTYA YNTVIALVQL SAQSEVSPEL
TAEVISNGLK TIFILGALSV GLAMPSLLYF RTRPVI