Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0872 |
Symbol | |
ID | 4924229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 992554 |
End bp | 993315 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640162405 |
Product | hypothetical protein |
Protein accession | YP_001093003 |
Protein GI | 127511806 |
COG category | [S] Function unknown |
COG ID | [COG2966] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0121559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTACGCCG ATACTCAAAA TGATATTACC CGGCAGGTTG TCCGGGTTGC TCAACTCTTA CTGGCCTATG GTGCTGAGTC CGACCTCGTC GAAGAGATCA GCCAGCGCCT GGGTCAGGCA TTAGGTCTCG CCAGTGTCGA GATCTCCATC TCCTCTAACT CTCTGGTACT GACCAGCCTG GTGCACGGTC GCTGTATCAC CACTACCCGG CGCATTCGCG AGCATGGCAT CAATATGACC ATCATCTGCG AGCTGCAGCG TATCTGCCTG TTGACCGAGA AGGGGATCTA CGGCCTCAAC GAGGTGCGCA AACGTGTCTC GCGGATCCAG CCAAAGAGCT ATCCTAGGCG TTATCTGGTG CCCATGATCG GCCTCTCCTG TGGCAGTTTC TGCCACCTGT TTGGTGGCGA TACCATGGCG GTGTTGATCA CCATAATGGC CGCATCAGTG GGCATGTCGG TGCGTCTGGC CATCGCCAAG CATCATTTCA ACCTGCTGGT GAACTTTGCG GTGACCGCCT TTATCACCAC CTTGGTGGCG CAGATGGGCT ATCACCTGCA ACTGACCGAT ACCCCTAAGC TGCCGATGGC CGCCAGTGTG CTGATGTTGG TGCCGGGTTT TCCCATGATC AACGCGATCT CGGATATGGT GAAGGGGCAC CTTAACGTGG GGATCTCCCG TTGGGGCCAC GCTACCCTGT TGACCGTCTC ATCCGTCATA GGGATCACCA TCGCCATGCA ACTGGGAGGA CTCTTCCTAT GA
|
Protein sequence | MYADTQNDIT RQVVRVAQLL LAYGAESDLV EEISQRLGQA LGLASVEISI SSNSLVLTSL VHGRCITTTR RIREHGINMT IICELQRICL LTEKGIYGLN EVRKRVSRIQ PKSYPRRYLV PMIGLSCGSF CHLFGGDTMA VLITIMAASV GMSVRLAIAK HHFNLLVNFA VTAFITTLVA QMGYHLQLTD TPKLPMAASV LMLVPGFPMI NAISDMVKGH LNVGISRWGH ATLLTVSSVI GITIAMQLGG LFL
|
| |