Gene Shew_0872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0872 
Symbol 
ID4924229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp992554 
End bp993315 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content57% 
IMG OID640162405 
Producthypothetical protein 
Protein accessionYP_001093003 
Protein GI127511806 
COG category[S] Function unknown 
COG ID[COG2966] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0121559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTACGCCG ATACTCAAAA TGATATTACC CGGCAGGTTG TCCGGGTTGC TCAACTCTTA 
CTGGCCTATG GTGCTGAGTC CGACCTCGTC GAAGAGATCA GCCAGCGCCT GGGTCAGGCA
TTAGGTCTCG CCAGTGTCGA GATCTCCATC TCCTCTAACT CTCTGGTACT GACCAGCCTG
GTGCACGGTC GCTGTATCAC CACTACCCGG CGCATTCGCG AGCATGGCAT CAATATGACC
ATCATCTGCG AGCTGCAGCG TATCTGCCTG TTGACCGAGA AGGGGATCTA CGGCCTCAAC
GAGGTGCGCA AACGTGTCTC GCGGATCCAG CCAAAGAGCT ATCCTAGGCG TTATCTGGTG
CCCATGATCG GCCTCTCCTG TGGCAGTTTC TGCCACCTGT TTGGTGGCGA TACCATGGCG
GTGTTGATCA CCATAATGGC CGCATCAGTG GGCATGTCGG TGCGTCTGGC CATCGCCAAG
CATCATTTCA ACCTGCTGGT GAACTTTGCG GTGACCGCCT TTATCACCAC CTTGGTGGCG
CAGATGGGCT ATCACCTGCA ACTGACCGAT ACCCCTAAGC TGCCGATGGC CGCCAGTGTG
CTGATGTTGG TGCCGGGTTT TCCCATGATC AACGCGATCT CGGATATGGT GAAGGGGCAC
CTTAACGTGG GGATCTCCCG TTGGGGCCAC GCTACCCTGT TGACCGTCTC ATCCGTCATA
GGGATCACCA TCGCCATGCA ACTGGGAGGA CTCTTCCTAT GA
 
Protein sequence
MYADTQNDIT RQVVRVAQLL LAYGAESDLV EEISQRLGQA LGLASVEISI SSNSLVLTSL 
VHGRCITTTR RIREHGINMT IICELQRICL LTEKGIYGLN EVRKRVSRIQ PKSYPRRYLV
PMIGLSCGSF CHLFGGDTMA VLITIMAASV GMSVRLAIAK HHFNLLVNFA VTAFITTLVA
QMGYHLQLTD TPKLPMAASV LMLVPGFPMI NAISDMVKGH LNVGISRWGH ATLLTVSSVI
GITIAMQLGG LFL