Gene Shew_0868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0868 
Symbol 
ID4920587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp989310 
End bp990281 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content53% 
IMG OID640162401 
Producttrans-hexaprenyltranstransferase 
Protein accessionYP_001092999 
Protein GI127511802 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000612724 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTGA ATGCCATTCG TCAGCTGGCA GACGCTGATA TGAAAGCCGT CGACCAACTT 
ATCTATAAGC AGTTGGAATC GGATGTCGCC CTTATTAATC AACTCGGATT CTACATCATC
AATGGCGGCG GCAAACGCAT GCGTCCGCTG CTCTCTATCT TGGCCGCCCG CGCCATCGCC
TATGAAGGTG AAGCGCATCT TAAACTGGCG GCAATCGTTG AGTTTATCCA TACCGCGTCT
CTGCTACACG ACGACGTGGT CGATGAGTCT ATGCTTAGAC GCGGCCGAGA AACCGCCAAC
GCCCTGTTTG GTAACAGTGC CAGCGTACTG GTCGGTGACT TCCTCTATAC CCGCTCTTTC
CAGATGATGA CAGAGCTGAA GAGCATGGAG GTACTTGAAG TGCTCGCCGA TGCCACCAAC
GTATTGGCTG AAGGCGAAGT ATTGCAGCTA ATGAACTGTA ACGACCCAGA CACCAGCGAA
GAGAGCTACA TGCGGGTGAT CTACTGCAAG ACAGCGAAAC TATTTGAAGC TGCCACCCGT
CTGGCTGGTG TGCTGGCCGA AAGCAGCATA GAAGTGCAGA CCGCACTGGC CGACTATGGT
AAGTATCTGG GCACAGCCTT CCAGCTCACC GACGATCTAT TGGACTATAC GGCCGATACT
GAGGCTTTAG GTAAGAACAT AGGCGACGAC TTGGCCGAGG GTAAGCCTAC CCTGCCATTA
ATTTATGCCA TCGCCAACGG CAACGAGCTG GAGCGTCAAT TAATTCGCGA TGCGATTGAG
AAAGGTGACG GCACTGAGCA TATCGATACC ATACTAAATG CCCTTAAGCA GTGTGGCGCC
CTAGACTACA CAGAGAAACG CGCTCGGGAA GAAGCAGAGA AGGCGATACG CGCATTAGAT
CTAATACCCG ATAGCGACTA TAAGCAGGCG CTGATATCGC TGGCGAGAAT CGCCGTGGCG
CGCGATCACT AA
 
Protein sequence
MDLNAIRQLA DADMKAVDQL IYKQLESDVA LINQLGFYII NGGGKRMRPL LSILAARAIA 
YEGEAHLKLA AIVEFIHTAS LLHDDVVDES MLRRGRETAN ALFGNSASVL VGDFLYTRSF
QMMTELKSME VLEVLADATN VLAEGEVLQL MNCNDPDTSE ESYMRVIYCK TAKLFEAATR
LAGVLAESSI EVQTALADYG KYLGTAFQLT DDLLDYTADT EALGKNIGDD LAEGKPTLPL
IYAIANGNEL ERQLIRDAIE KGDGTEHIDT ILNALKQCGA LDYTEKRARE EAEKAIRALD
LIPDSDYKQA LISLARIAVA RDH