Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0868 |
Symbol | |
ID | 4920587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 989310 |
End bp | 990281 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640162401 |
Product | trans-hexaprenyltranstransferase |
Protein accession | YP_001092999 |
Protein GI | 127511802 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000612724 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTGA ATGCCATTCG TCAGCTGGCA GACGCTGATA TGAAAGCCGT CGACCAACTT ATCTATAAGC AGTTGGAATC GGATGTCGCC CTTATTAATC AACTCGGATT CTACATCATC AATGGCGGCG GCAAACGCAT GCGTCCGCTG CTCTCTATCT TGGCCGCCCG CGCCATCGCC TATGAAGGTG AAGCGCATCT TAAACTGGCG GCAATCGTTG AGTTTATCCA TACCGCGTCT CTGCTACACG ACGACGTGGT CGATGAGTCT ATGCTTAGAC GCGGCCGAGA AACCGCCAAC GCCCTGTTTG GTAACAGTGC CAGCGTACTG GTCGGTGACT TCCTCTATAC CCGCTCTTTC CAGATGATGA CAGAGCTGAA GAGCATGGAG GTACTTGAAG TGCTCGCCGA TGCCACCAAC GTATTGGCTG AAGGCGAAGT ATTGCAGCTA ATGAACTGTA ACGACCCAGA CACCAGCGAA GAGAGCTACA TGCGGGTGAT CTACTGCAAG ACAGCGAAAC TATTTGAAGC TGCCACCCGT CTGGCTGGTG TGCTGGCCGA AAGCAGCATA GAAGTGCAGA CCGCACTGGC CGACTATGGT AAGTATCTGG GCACAGCCTT CCAGCTCACC GACGATCTAT TGGACTATAC GGCCGATACT GAGGCTTTAG GTAAGAACAT AGGCGACGAC TTGGCCGAGG GTAAGCCTAC CCTGCCATTA ATTTATGCCA TCGCCAACGG CAACGAGCTG GAGCGTCAAT TAATTCGCGA TGCGATTGAG AAAGGTGACG GCACTGAGCA TATCGATACC ATACTAAATG CCCTTAAGCA GTGTGGCGCC CTAGACTACA CAGAGAAACG CGCTCGGGAA GAAGCAGAGA AGGCGATACG CGCATTAGAT CTAATACCCG ATAGCGACTA TAAGCAGGCG CTGATATCGC TGGCGAGAAT CGCCGTGGCG CGCGATCACT AA
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Protein sequence | MDLNAIRQLA DADMKAVDQL IYKQLESDVA LINQLGFYII NGGGKRMRPL LSILAARAIA YEGEAHLKLA AIVEFIHTAS LLHDDVVDES MLRRGRETAN ALFGNSASVL VGDFLYTRSF QMMTELKSME VLEVLADATN VLAEGEVLQL MNCNDPDTSE ESYMRVIYCK TAKLFEAATR LAGVLAESSI EVQTALADYG KYLGTAFQLT DDLLDYTADT EALGKNIGDD LAEGKPTLPL IYAIANGNEL ERQLIRDAIE KGDGTEHIDT ILNALKQCGA LDYTEKRARE EAEKAIRALD LIPDSDYKQA LISLARIAVA RDH
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