| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0853 |
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| Symbol | |
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| ID | 4923445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 975818 |
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| End bp | 977593 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162386 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001092984 |
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| Protein GI | 127511787 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0413616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCCCA CGCTCTATTT TGATGGTCCT ATCGATAAAC TGAACTGGCA TGTCCTGAAA
TTGCTTTGGC CCTATTTGTT GGAGTTTAAG GGGCGAGTGA TCTTGGCGCT TGCTTGTCTG
GTGGTGGCCA AAATGGCGAG TGTTGGCCTG CCATTCGTGC TCAAGCAATT GGTGGATACC
CTGAGTGAGG CCTCAGTCGA GCAGATGATC GCCGTGCCCA TCGCCCTGGT GCTCGCGTAC
GGCAGCCTTC GCCTGCTCAA TACGGTGATC TCAGAGGTGA GAGACACACT ATTTGGCCGG
GTCACCGAGC GGGCGATAAG GCGTCTTGGC TTGTCAGTGT TTGACCATCT GCACCGGCTG
GATCTGGCAT TTCATCTTGA GCGGCGTACC GGGGGACTGT CGCGGGATAT CGAGCGCGGT
ACCAGCGGGG TCAGCTTCTT GATGCGCTTC ATGGTATTCA ACATAGTACC GACCCTGCTC
GAGATAGGCC TGGTGGTGGG CATCTTGCTG TATAACTATG GCTGGGCGTT TGCGTTAATT
ACTCTGAGCG CGGTCGTCGC CTACATCCTC TTCTCCATCT TCGCCACCGA ATGGCGTACC
GGCTTCGTGC GGGAGGCGGC GATGGCCGAT TCTCAGTCCA ATACCCGCGC CATAGATAGC
CTGCTTAACT ATGAGACGGT GAAGTACTTT AACAACGAGG CCTATGAATC TGAGCAATAT
GATCATGCCC TCGAGCGCTG GGAAGTGGCC AAGCGTAAGA ATCGACTCTC ATTGTTTGCG
CTCAATGCCG GTCAGGCGCT GATCATCTCG CTGGCGATGA CCCTGATGTT GGCGCTGGCG
GCGACTCAGG TGAGCCAAGG GGCTATGACC ATAGGTGACT TTGTGCTGAT CAACGCCTTC
ATGATGCAGC TGTTTATGCC TCTGAATTTT TTAGGCTTCG TCTACCGCGA GATCCGCGGC
GCCCTGGCCA ACATAGAGCG CATGTTTAGC TTGCTAGACA GGCAGCCTAA GATTGAGGAT
GGCCCCGATG CGACATCGCC CCAGATCGCC CAAGGGAGCC TTAAATTTGA GGGGGTGAGT
TTTCGCTACG GTGACAGGCC TATCTTGTCC GATGTGAGTT TCGAGATCCC CGCCGGTCAC
AAGGTGGCGA TAGTGGGGGA TAGCGGCGCG GGAAAATCCA CCATAGTGAA GCTGTTGTTT
CGCTTCTATG AGACGCAGCA GGGGACTATC ACCATAGATG GCCATGATAC CAAGGCGCTG
ACTCAACACG CGCTGCGTAG CGCCATCGCC ATAGTGCCCC AAGATACCGT GTTGTTTAAC
GACTCCCTAA TGGAGAATAT TCGTTATGGT CTGCCGGGGG CGAGCGATGA GCAGGTGAAG
GCGGCGATAG AGCTGGCGCA TCTGTCAAAC TTCGTCTCGC AACTCAGCGA AGGCTGGCAC
ACCAAGGTGG GTGAGCGCGG GTTAAAACTC TCCGGCGGCG AGAAACAGAG GGTGGCGATC
GCCAGGGCGA TCCTCAAGGG CTCGCCCCTA TTGGTGTTCG ATGAGGCGAC CTCTTCGCTG
GATAGCCATT CGGAGCAGGC GATCCTCAAT GCGCTCAAAG AGATGGCCAA GGGGCATACG
AGTCTTGTTA TCGCCCACAG GCTGTCGACG GTCGTGGATG CCGACCAGAT CTTGGTGCTG
AGTCAGGGCA AGATAGTTGA ACGTGGCGAT CATCAGAGCC TGCTGGCGGC CGATGGTCTG
TATAAGAAAT TGTGGACCGT ACAAAATCAG CATTAA
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| Protein sequence | MRPTLYFDGP IDKLNWHVLK LLWPYLLEFK GRVILALACL VVAKMASVGL PFVLKQLVDT
LSEASVEQMI AVPIALVLAY GSLRLLNTVI SEVRDTLFGR VTERAIRRLG LSVFDHLHRL
DLAFHLERRT GGLSRDIERG TSGVSFLMRF MVFNIVPTLL EIGLVVGILL YNYGWAFALI
TLSAVVAYIL FSIFATEWRT GFVREAAMAD SQSNTRAIDS LLNYETVKYF NNEAYESEQY
DHALERWEVA KRKNRLSLFA LNAGQALIIS LAMTLMLALA ATQVSQGAMT IGDFVLINAF
MMQLFMPLNF LGFVYREIRG ALANIERMFS LLDRQPKIED GPDATSPQIA QGSLKFEGVS
FRYGDRPILS DVSFEIPAGH KVAIVGDSGA GKSTIVKLLF RFYETQQGTI TIDGHDTKAL
TQHALRSAIA IVPQDTVLFN DSLMENIRYG LPGASDEQVK AAIELAHLSN FVSQLSEGWH
TKVGERGLKL SGGEKQRVAI ARAILKGSPL LVFDEATSSL DSHSEQAILN ALKEMAKGHT
SLVIAHRLST VVDADQILVL SQGKIVERGD HQSLLAADGL YKKLWTVQNQ H
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