| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0809 |
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| Symbol | |
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| ID | 4923578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 927171 |
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| End bp | 931403 |
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| Gene Length | 4233 bp |
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| Protein Length | 1410 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640162342 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001092940 |
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| Protein GI | 127511743 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAAC TCACCTTCGA CGGCCAGGTC GTCAAAGCCA ACCGGGGCGA AGATCTGCTC
ACCTGTGCCA AGGCCGCAGG CATAGCGATC CCTAATTTAT GTCATCTGGG CAAGCAACTG
GACGACAAAC TCGCAGGCAA ACAAGACTGT AACCTCTGCT ATGTCGAGGT ACGCGACGAA
AAGGGCGACT TCCACACGGT CAAGGCCTGT AAGACACAGG TCGAGGCACA GCTCGAGGTG
ATCACCCATT CGGCCGCCCT CAGCAAACGC CGCCAGGCGG CACTGAAACA CCTTTTGAGC
GACCACTTCG CCGACTGCGA AGCCCCCTGC CAACAGGCCT GTCCGGCCGG CGTAGACGTG
CAGTCCTATC TGCTGCATAT CGCCCAGGGC AACCACAAGG AAGCGGTCAA GGTGATCAAA
CAAACCCTAC CGCTACCGCT CTCTATCGGC CGTGTCTGCC CGGCCTTTTG CGAATCGGCC
TGTCGCCGCG GCGAGTTGGA TGAGCCCCTG GCCATTCGCC AACTCAAGCG TCACGCCGCC
GATCTGGATC TGGGCAGTGA AGACACCTAT GTGCCGCCCA AGGCGCCAGC TACCGGCAAA
CGCGTCGCCA TCATAGGCAG CGGCCCGGCG GGGATCAGCG CGGGTTACTA TCTCTCCAAT
TCAGGCCATG AGGTGACCAT TTTCGAGTCC ATGCCTAAGG CGGGCGGCTG GCTAAGATAC
GGTATCCCCG AATACCGTCT GCCCAAGCAG ATCCTGGACA GAGAGATAGA CCTGCTGTGC
CAGAATGGCC TGGTGATACA GACAGATACT CGTCTCGGCC GCGACATCCA CCTCAAGGAG
CTGGTCAACC AATTCGACGC CGTCTGTCTC GCCATCGGCG CCCAGAAGGC GGTGCCCATG
AACTATCCTG GCGTAGACCT CGAAGGCTGC TACTTGGGGG TGGATTACCT TAAGGATCAC
TGCACAGACA ACAACTACCA CACAGGCCAG AAGGTGGCGG TGATCGGCGG CGGCAACACC
GCCATCGACT GCGCCCGCAC CGCGCTGCGC AAGGGCGCCG AGGTAACCCT GGCCTATCGC
CGCACCCGCG ACGAGATGCC GGCAGAGGTC TATGAGATAG AGGAGGCCGA ACATGAGGGC
GTGCGCTTCT ATTTCCTCAC TAACCCTATC GAAAACCATG GCGACGCCAA TGGCCGTATC
AATGCCATCA CCTTCGAGAA GATGCGCCTT GGCGAACCCG ATGCCTCCGG CAGACGCTCA
CCCCAGACCA CAGGCGAGAC CTTCACCGAG GCGTTCGATA CTGTGATCCC GGCGGTCTCC
CAGACCCCGG ACATGACCTT CCTCGAACAT CCAGAGAGCC AGCTCTCCAC CGGCGAGGTG
GCCCTGACCC GCTGGAACAC CTTCTCCGGC TGTGAACATA CTATGTCCTC AGGGGTGGAG
AAACTGTTCG TGCTCGGTGA TTCGCGCACC GGCCCCGCCA CGGCGGTTGC CGCGGTGGCC
GATGGGCGTA AGGCCGCCAA TGCCATCGAG AAACTGCTGA GCGGCGAGCT GAGCTGTGAG
CTGACACCTG CGCCCTTCAA CTCCCAGAAG CAGGATGAGC AGAAGCCAGA CAGCCGTCAC
TTCCCGGCTC GTCTGCTACA GGCCAAGGCC AAGATGCCGG AACTCGCCAT CAACAAGCGC
CTGGATAATT TCGACGAGAT AGAACTCGGC TTTAACGATG AGGAGGCGAT GCTCGAGGCC
GCCCGCTGCC TGGAGTGTGG CTGTCAGGCC AACACTGAGT GTGCCCTGCG GGACTACGCC
ACCGAGTACC GTGTCGATGG TGCCGCGCTC GATAAACAGG GCCACCGCGC CTTTACCCAG
GATGCCAGCA CGCCTTTTAT CAACTTCGAC CCCAACCGCT GCATCAGCTG CGGGGCCTGC
GTCGCCATGT GCCGCCAGCA GTCTGGCCAT CAGGCGATCA GTTTCGAGCC CGACAGTTAC
CTGGCACTGC CCCAGGAGAT GGCCGCAACA CACAGCCGCC AGGCGCCCCG CGCCGGGTTC
AGCGCCACCA TGGCCGACAG CCAATGCGTC CAGTGCGGTA ACTGTGTCCA GGTCTGCCCC
ACAGGGGCGC TGACCGATGC CAGAGACAAG CGTCAGGGGG TTAAACATGA GCTGAAACAG
ACCTCCACCG TCTGCACCTA CTGCGGCGTA GGCTGCCGTG TCATCATCCA TAGCGATCCC
GTGACTGGTG AGATCAAACG TGTCTCGGGC GACAGCCGAT CCCAGGTCAA CGAGGGGATG
CTCTGCGTCA AGGGCCGCTT CGGATTTGAC TTCATCAACA GCCAGCAACG TCTGACCCAG
CCGCTGCTGC GCAAAGATGG CGAGCTGGTG CCGGTCAGCT GGAATGAGGC GATCGACTAC
ATAGGCACCG AGCTTGGTCG CATCAAGGCC GAACATGGCG GTGACGCCAT CGCCGGTCTG
GCCTCCGCCA AGGCGACCAA CGAAGATAAC TATCTGTTCC AAAAGCTGTT TAGAAGCGTC
ATCGGCACCA ACAACATAGA TCACTGCGCC CGCCTGTGTC ATGCCTCGAC GGTCACCGCC
CTGCAGGAGA GCCTTGGCAG CGGCGCCATG ACCAATGATA TTCCGTCGAT AAAATCCTCG
GATCTCATCT TCATCCTGGG CTCGGATACC GAAGCCGCCC ACCCCATCAT CGCCTCCAAG
ATCAAACAGG CGGTGAGCCA ACACGGTGCC CGCCTGGTGG TGGCCGACCC CAAACGGGTG
AGCATCGCCG ACAGCGCCGA GCTCTACGTG CGTCATCGCC CCGGCAGCGA CGTTATGCTG
CTCAACGCCA TCATGCAGGA GATCATCAAG CAGGGCTGGC ACGACGAGGA CTATATCGAC
CGACGCGTAG AAGGATTCGA TGCACTTCGC ACCGAGGTGA TGAAGGACGA CTACAGCCTA
GACAATGCGG CCAAGATCAC TGGGGTTGGC GAAGAGGAGA TAGCCCAGCT GGCCCGCATG
ATAGGCACGG CAGAGAAGAC CGCCATCTAC TATGCCATGG GGATCACCCA GCACACCTCG
GGACACGACA ATGTCACCGC CATCGCCAAC CTGCAACTGC TGTGCGGCAA CATAGGCATC
GAGGGCGCGG GGATCAATCC ACTGCGGGGC CAGAGCAATG TCCAGGGCGC CTGTGACATG
GGCGCCCTGC CCAACTACTT CACCGGCTAC CAGAAGGTGA CCGACCCCGA GGTGCAAGCC
GCCTTCAGAC AGGCCTGGCA ACAGGAGTGG CTACCAGATC AGATAGGTCT GGCGGCCACC
GAGATGATGC ACGCCCTGGC CCACGGCAGG CTCAAAGCCC TCTATGTGAT GGGAGAAAAC
CCTGTACTGA GCGATCCCGA CCAGGCTCAT GTGATGCAAG GGCTGGAGTC GGCCGAGCTG
CTGATCGTCC AGGATATCTT CATGACGGAG ACGGCCCAGC TGGCCGACGT GGTATTGCCG
GCCGCCAGCT TCGCCGAGAA GCCAGGCCAC TTCACCAATA CCGAGCGTCG GGTGCAGCGT
CTGCAGGCGG CCATCGACAG CCCAGGCCTG GCCCGCCGCG ACTGGCAGAT CATCACAGAT
ATCGCCAAGG CCCTTGGCGC CGACTGGCAC TATGAGGATG AAGCGTCCAT CTGGCAGGAG
CTGACCCGCG TCACACCCCA GTACCGCGGC ATCCAATGGC AGGACACAGA CCCGAGTACG
CCGAAAGGCC TGCTGGGTAA GCAGTGGCCC TGCCCAGAGC CTGGCCATGA GGGCACCCGC
CTGATGCATA AAGAGCGCTT TACCCGAGGG CTCGGCAAGA TGACGCCCGT CGGCTACCGC
CTACCGGCCG AACTGCCCTG CGAAGATTAT CCCTTCACCC TCTCCACCGG GCGCCTGCTG
GAGCAGTTCC ACACCGGCAC CCTGACCCGC AAGACGGACG GCCTCAATAC CCTGGGGTCG
CCCAGGGTGA TGATGTCGGC CATCGACGCC GACCGTCTAG GGGTGAACAA CGGCGACGTG
CTGACTCTGT CGACGAGACG CGGCAGCATC AACATCGCCG CCTTCGTCAC GCGCCGCGCC
CAGCCGGGAG TGCTCTTCCT GCCCTTCCAC TTTGCCGAGG CGGCGGCTAA CAAGCTGACC
AACAATGTGC TGGACCCTGT GGCCAAGATC CCCGAGTTTA AGATCTGCGC CGTCAGGGTC
GAGAAGGCCA GCGAGGCGAT CTGCTGGTCT TAG
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| Protein sequence | MIELTFDGQV VKANRGEDLL TCAKAAGIAI PNLCHLGKQL DDKLAGKQDC NLCYVEVRDE
KGDFHTVKAC KTQVEAQLEV ITHSAALSKR RQAALKHLLS DHFADCEAPC QQACPAGVDV
QSYLLHIAQG NHKEAVKVIK QTLPLPLSIG RVCPAFCESA CRRGELDEPL AIRQLKRHAA
DLDLGSEDTY VPPKAPATGK RVAIIGSGPA GISAGYYLSN SGHEVTIFES MPKAGGWLRY
GIPEYRLPKQ ILDREIDLLC QNGLVIQTDT RLGRDIHLKE LVNQFDAVCL AIGAQKAVPM
NYPGVDLEGC YLGVDYLKDH CTDNNYHTGQ KVAVIGGGNT AIDCARTALR KGAEVTLAYR
RTRDEMPAEV YEIEEAEHEG VRFYFLTNPI ENHGDANGRI NAITFEKMRL GEPDASGRRS
PQTTGETFTE AFDTVIPAVS QTPDMTFLEH PESQLSTGEV ALTRWNTFSG CEHTMSSGVE
KLFVLGDSRT GPATAVAAVA DGRKAANAIE KLLSGELSCE LTPAPFNSQK QDEQKPDSRH
FPARLLQAKA KMPELAINKR LDNFDEIELG FNDEEAMLEA ARCLECGCQA NTECALRDYA
TEYRVDGAAL DKQGHRAFTQ DASTPFINFD PNRCISCGAC VAMCRQQSGH QAISFEPDSY
LALPQEMAAT HSRQAPRAGF SATMADSQCV QCGNCVQVCP TGALTDARDK RQGVKHELKQ
TSTVCTYCGV GCRVIIHSDP VTGEIKRVSG DSRSQVNEGM LCVKGRFGFD FINSQQRLTQ
PLLRKDGELV PVSWNEAIDY IGTELGRIKA EHGGDAIAGL ASAKATNEDN YLFQKLFRSV
IGTNNIDHCA RLCHASTVTA LQESLGSGAM TNDIPSIKSS DLIFILGSDT EAAHPIIASK
IKQAVSQHGA RLVVADPKRV SIADSAELYV RHRPGSDVML LNAIMQEIIK QGWHDEDYID
RRVEGFDALR TEVMKDDYSL DNAAKITGVG EEEIAQLARM IGTAEKTAIY YAMGITQHTS
GHDNVTAIAN LQLLCGNIGI EGAGINPLRG QSNVQGACDM GALPNYFTGY QKVTDPEVQA
AFRQAWQQEW LPDQIGLAAT EMMHALAHGR LKALYVMGEN PVLSDPDQAH VMQGLESAEL
LIVQDIFMTE TAQLADVVLP AASFAEKPGH FTNTERRVQR LQAAIDSPGL ARRDWQIITD
IAKALGADWH YEDEASIWQE LTRVTPQYRG IQWQDTDPST PKGLLGKQWP CPEPGHEGTR
LMHKERFTRG LGKMTPVGYR LPAELPCEDY PFTLSTGRLL EQFHTGTLTR KTDGLNTLGS
PRVMMSAIDA DRLGVNNGDV LTLSTRRGSI NIAAFVTRRA QPGVLFLPFH FAEAAANKLT
NNVLDPVAKI PEFKICAVRV EKASEAICWS
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