| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0801 |
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| Symbol | rumB |
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| ID | 4920809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 913532 |
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| End bp | 914671 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162334 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001092932 |
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| Protein GI | 127511735 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGTG CCTATTTCGA TGCTAATCAG TGTCTTTCCT GTCGTCATCT CAAGACGCCC
CTGAGTGATC AGGTGGCGGC GAAAACGGCG ACCCTAGCGG CATTGCTCAA GGATCTGTCG
GTGGAGCAGT GGCTTCCTCC CGTGGTGGGG CCAGAGAGCG GTTTTCGTAA CAAGGCCAAG
ATGGTGGTGT TGGGCGCCGC CCATCAACCT ATATTGGGGC TGGTGAGCCC GAGCGGCGAG
GCGGTGAGCC TGTGTGATTG CAGCCTCTAT CCTCAGGATA TGCAGCAGTT GCTGCATCGT
TTAGAGGCGT TCGTGCGCCA GGCCGGTATT CCGCCCTATA GGGTCGATAA GGCCAAGGGC
GAGCTTAAAT TTATCCTGCT GACCCGCAGT CAGGTACGCG GCGAGTATAT GCTGCGTTTC
GTGATGCGCT CGGAGCAGGC CATTCCCCGC ATCGAACGTG AACTGCCAAG GCTGTTAGCC
GAGCACCCTG AGATCAAGGT GGTGTCGGTG AACCTCCAGC CCGTGCATAT GGCTATTTTG
GAGGGAGAGG AGGAGATCTT CCTTACCGAG GCGACTCGGC TGGAGGAGGA ATTTAATGGC
GTGCCCCTCT ACATTCGTCC AAAGAGCTTC TTCCAGACCC ATCCCGAAGT GGCGGCCAAG
CTCTACCTGA GCGCGCGGAA GTGGACCCGT GAGTTGGCGC CTACATCGAT TTGGGATCTC
TTCTGCGGCG TCGGCGGTTT CGGCCTGCAC TGCGCCTCGA AAGAGGTGGC CCTGACCGGC
ATAGAGATCG AGGCCGAGGC GATCGCCTGT GCCAAGATGT CGGCCGAGAC GCTGGGGCTT
GATAAGGTGC GCTTCACCGC GCTGGACTCG ACCAGCTTCG CCAGCGACAG CCGCGGCGAA
GAGAAGCCGG AGCTTATTAT AGTCAACCCG CCCAGACGCG GTATCGGCGA GGCTTTGTGC
CACTCCCTGA GCGAGTTTGC CCCTAAGGCG ATCCTCTACT CCAGCTGTAA TCCCAAGACG
CTGGCCAAAG ATCTACATTG CATCTCAGGC TACCGGGTGA CCAAGGTGCA GCTGTTTGAC
ATGTTCCCCC ACACAGATCA TTTCGAGGTG CTGGTGATGC TGCAGCGCAT CGGCGAGTAA
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| Protein sequence | MKCAYFDANQ CLSCRHLKTP LSDQVAAKTA TLAALLKDLS VEQWLPPVVG PESGFRNKAK
MVVLGAAHQP ILGLVSPSGE AVSLCDCSLY PQDMQQLLHR LEAFVRQAGI PPYRVDKAKG
ELKFILLTRS QVRGEYMLRF VMRSEQAIPR IERELPRLLA EHPEIKVVSV NLQPVHMAIL
EGEEEIFLTE ATRLEEEFNG VPLYIRPKSF FQTHPEVAAK LYLSARKWTR ELAPTSIWDL
FCGVGGFGLH CASKEVALTG IEIEAEAIAC AKMSAETLGL DKVRFTALDS TSFASDSRGE
EKPELIIVNP PRRGIGEALC HSLSEFAPKA ILYSSCNPKT LAKDLHCISG YRVTKVQLFD
MFPHTDHFEV LVMLQRIGE
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