| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0787 |
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| Symbol | |
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| ID | 4920669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 899614 |
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| End bp | 900603 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162320 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001092918 |
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| Protein GI | 127511721 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.153574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0635435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATAG GTTTTTTTAG TGCTAAGCAC TATGACATGG AACATTTCAA CCGCACCAAC
CAGGCCTTTG GCGCTCAGAT TGAGTATTTC GACTATCGCC TCTGTATGCA GTCGGTCAAG
CTGGCCTATG GTTTCGAGGT GATCTGCGCC TTCGTCAACG ATTCGCTATG TGAAGAAGTA
TTGGTAGAGC TAGCTAAAAA TGGCACTAAG ATCATTGCGA TGCGCTGCGC CGGATTTAAC
AACGTCGATC TCGAGGCGGC CAAACGCCTG GGGATCAGGG TGGTAAACGT TCCCGCCTAT
TCGCCCGAGT CGGTGGCGGA GCATACTGTG GCCCTGATGC TGACCCTCAA CCGTAAGGTG
CACAAGGCCT ACCAACGTAC CCGCGATGCC AACTTCTCCC TCGAGGGGCT GGTGGGCTTC
AACATGCATG GCCGCACCGT CGGCGTGATC GGCACGGGTA AGATAGGGGT GGCGACCATC
AAGATCCTCC TGGGCTTCGG CTGTAAGGTT GTGGTTTACG ACCCTTATCC TAACCAGGCG
GTGCTGGATA TGGGCATCGA ATACCTGTCG CTGGATGAGC TTTATGCCGT GAGCGACATC
CTCAGCCTGC ATTGTCCGCT GACCAAAGAG AACCATCATC TGCTCAACAA GGCGAGCTTT
GACAAGATGA AGCCTGGTGT CATGGTGATC AACACCAGCC GTGGCGGCCT GCTAAATGCT
TTCGATGCCA TGGAGGCGCT CAAGACGGGG CAGATAGGTT CCCTCGGGCT AGACGTGTAC
GAGAATGAGA AAGAGCTCTT CTTCGAGGAT AAGTCGAACC AGATCATCCA GGACGATGTG
TTCAGACGCC TGTCGGCCTG CCACAACGTG ATCTTTACCG GTCACCAGGC CTTCCTCACC
GAAGAGGCGC TGGGCGCCAT TGCCCACACC AGCCTGACCA ATGTGCGTCA GCTGCTCGAT
GGCGAAGCGT GTCCTAACCA GCTATTTTAA
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| Protein sequence | MRIGFFSAKH YDMEHFNRTN QAFGAQIEYF DYRLCMQSVK LAYGFEVICA FVNDSLCEEV
LVELAKNGTK IIAMRCAGFN NVDLEAAKRL GIRVVNVPAY SPESVAEHTV ALMLTLNRKV
HKAYQRTRDA NFSLEGLVGF NMHGRTVGVI GTGKIGVATI KILLGFGCKV VVYDPYPNQA
VLDMGIEYLS LDELYAVSDI LSLHCPLTKE NHHLLNKASF DKMKPGVMVI NTSRGGLLNA
FDAMEALKTG QIGSLGLDVY ENEKELFFED KSNQIIQDDV FRRLSACHNV IFTGHQAFLT
EEALGAIAHT SLTNVRQLLD GEACPNQLF
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