Gene Shew_0739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0739 
Symbol 
ID4924066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp840729 
End bp842000 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content57% 
IMG OID640162272 
Productaromatic amino acid permease 
Protein accessionYP_001092870 
Protein GI127511673 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0814] Amino acid permeases 
TIGRFAM ID[TIGR00814] serine transporter 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAACG AAGCGACAAT CTCTGATGTA AACCTCGCGC AGCGCCAAGG TTGGACTCGC 
AGCGACACGA CCTGGATGTT GAGCCTGTTC GGCACCGCCG TCGGCGCCGG TATCCTGTTT
CTACCCATCA ATGCCGGCAT GGGCGGTTTC TGGCCCCTGG TGCTGATGGC CGTGATTATC
GGTCCCATGA CCTACCTGGC CCACAGAGGC CTGTCTCGTT TCGTCTGCTC CTCTCAGCGT
CAGGGTAGCG ACATCACCCA TGTGGTCGAA GAGTATTTTG GCGTCGGCGC CGGTAAGGCG
ATCACCTTGC TCTACTTCTT CGCCATCTAC CCCATAGTGC TCATCTATGG TGTGGGTATC
ACCAACACGG TCGACAGTTT CATCGTCAAC CAGCTGGGCA TGGCCTCGCC ACCACGCTTC
CTGCTGTCCG GTATCTTAGT GCTGGGCATG ATGTCTGTGA TGGTGTCTGG CGAGAAGTTT
ATGCTCAAGG TGACTCAGCT GCTGGTGTAT CCACTGGTGG GGATCCTGGC CTTTATGTCG
CTGTACCTGA TCCCAAGCTG GAAGATGGAC GCCCTGATGG AAGTGCCTGC CGCCGGTGAG
TTTCTCGGTA CCGTCTGGCT GACTATTCCA GTGCTGGTAT TTGCCTTCAA CCATTCGCCA
GCCATCTCAC AGTTCTCGGT ATCGCTGAAG AAGCAGTACG GTAGTAACGC GGCCAAGAAG
GCCGATGTGA TCCTGCGTAA CACCAGCATG ATGTTGGTGG GCTTCGTGAT GCTGTTTGTC
TTCTCCTGCG TACTGTCGCT GAGTCCAGCC CAGCTGGCCG AAGCCAAGGC GCAGAACCTG
CCGATCCTCT CATACCTGGC CAACGTACAC GCCAGCGGTT TCGTCAGCTA TTTCGGCCCC
ATCATCGCGG TGATCGCCAT CGTCTCCTCA TTCTTCGGTC ACTACCTGGG CGCCACCGAA
GGCCTCAAGG GGATCATCAC CAAGCAGCTG CGTAGCAGCA ACAAGGAAGT GTCGGACGCC
AAGATCGACA AGTTTATTCT CGGCTTCATG TTCCTGACCA TCTGGGGTGT TGCCGTGATC
AACCCGAGCA TCCTGGGGAT GATCGAGGCC CTGGGCGGCC CTATCATCGC CGCGATCCTC
TACCTCATGC CTATGTATGC CGTCTACAAG GTGCCTGCGC TCAAGGCTTA CCGTGGTCGC
ATCAGCAACA TCTTGGTGAT CCTGGCAGGC TTGCTGGCGA TGACGGCCAT ACTGTTTGGC
ATGCTCTCTT AA
 
Protein sequence
MQNEATISDV NLAQRQGWTR SDTTWMLSLF GTAVGAGILF LPINAGMGGF WPLVLMAVII 
GPMTYLAHRG LSRFVCSSQR QGSDITHVVE EYFGVGAGKA ITLLYFFAIY PIVLIYGVGI
TNTVDSFIVN QLGMASPPRF LLSGILVLGM MSVMVSGEKF MLKVTQLLVY PLVGILAFMS
LYLIPSWKMD ALMEVPAAGE FLGTVWLTIP VLVFAFNHSP AISQFSVSLK KQYGSNAAKK
ADVILRNTSM MLVGFVMLFV FSCVLSLSPA QLAEAKAQNL PILSYLANVH ASGFVSYFGP
IIAVIAIVSS FFGHYLGATE GLKGIITKQL RSSNKEVSDA KIDKFILGFM FLTIWGVAVI
NPSILGMIEA LGGPIIAAIL YLMPMYAVYK VPALKAYRGR ISNILVILAG LLAMTAILFG
MLS