Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0678 |
Symbol | |
ID | 4923908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 772995 |
End bp | 773516 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162211 |
Product | protoporphyrinogen oxidase |
Protein accession | YP_001092809 |
Protein GI | 127511612 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism |
COG ID | [COG4635] Flavodoxin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.103464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCAAAA TATTAATCAT CTATTCCAGT GTGCATGGGC AGACCCGTAA GCTGTGCGAT TTCATGCAGC GCGAGCTCGA GGCGCTGGAA CATAGTGTCA CCTGCGCCAG CATAGACAAC CCGCCCGCTA TGGAAGGGTT CGATAAGATA GTCCTGGGCG CCAGCATTCG TCACGGCAAG CATAATCCCA GGGTGTACGA CTTCATTCGC GAGAACATCA AGGTGCTGCA GGAGAAGGCC AGCAGTTTCT TTTCGGTGAG CCTGGTGGCG CGCAAGCCCG CCAAGAATAC CCCTGAGACC AACCCGTACA TGCAGGCGTT TCTGGCCAAG TCGCCCTGGC AGCCAAAGCT GCTGGCGGTG TTTGGTGGTA ACCTGGATTA TCAGGGTTAT AACGCCCTGG ATCGCAACAT CATACGCTTC ATCATGTGGA TCACTAAGGG GCCGACGGCG CCGGATACCA AGGTCGAGTA CACCGACTGG GACAAGGTGA AGCACTATGC TCAGCAGGTC GACGCGCTCT AG
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Protein sequence | MSKILIIYSS VHGQTRKLCD FMQRELEALE HSVTCASIDN PPAMEGFDKI VLGASIRHGK HNPRVYDFIR ENIKVLQEKA SSFFSVSLVA RKPAKNTPET NPYMQAFLAK SPWQPKLLAV FGGNLDYQGY NALDRNIIRF IMWITKGPTA PDTKVEYTDW DKVKHYAQQV DAL
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