| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0643 |
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| Symbol | |
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| ID | 4924105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 731325 |
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| End bp | 732176 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162176 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001092774 |
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| Protein GI | 127511577 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGTC CGTTAATCGC CGCCATGCTG GCGTTCGCCT CGGTCACCAT ACTGGTGTGG
GCGCTTAAGC ATCTGTCGAC ACGCTTCGCC AAACGCTATC AGGAAACCTT TACCAGCTCG
GCCCGCACCA ACCTGTTCGA TATGTTCCTG TTTATCGAAC CTAGGCAGCT GTTTGTCATC
AACATGCTGA CCCTGTTGGC GGTGCCTTTC CTGGTGCGGC TCTTCTTCGG CTCCTGGGTG
CTGGGGATAT TATTGAGTAT CGCACTGGCG CTGCTACCGC GCTTCGCCTA TCAGTTCCTG
CATAAGCGCC GTCGCCGCAA GTTTGTCCAC CAGCTGCCCG ATGCACTCAA CATGATCGCC
TCTTCGATGC AGTCGGGGGC CAACGTCAGC AACGCCATCG AGTTTATGGC CGAAGAGATG
GAGGCGCCGA TCAAGCAAGA GTTTCAGCTC TTCCTGCGCG AGCAGCGCCT GGGGGTGGAA
TTCAACACGG CGCTGGACAA CATGTTTAAA CGCATCCCCG AAGAGGAGTT TCAGCTAGTG
ACCGCCGGCA TGCAGATCTC CCGCGAGGTC GGGGGCAACC TGGCGGAGGT GCTACAACGC
CTATCCGCCA CCCTGCGTAA GAAGATAGAG ATGGAAGGCA AGATAGATGC CCTGACCTCC
CAGGGCAAGA TGCAAGGGAT AGTGATGACA CTGCTGCCCG TCTTTATCGG CGTGGTGCTC
TATCACATGG AGCCCTCCGC CATGGGCCGT ATTCTCACCG AGCCTATGGG GTGGGCCCTG
ATTGCCCTGG TCATCATCAT GCTCACCAGT GGCTACCTGT CGATCCGTAA GATCGTCGCG
ATAGACGTAT AG
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| Protein sequence | MSSPLIAAML AFASVTILVW ALKHLSTRFA KRYQETFTSS ARTNLFDMFL FIEPRQLFVI
NMLTLLAVPF LVRLFFGSWV LGILLSIALA LLPRFAYQFL HKRRRRKFVH QLPDALNMIA
SSMQSGANVS NAIEFMAEEM EAPIKQEFQL FLREQRLGVE FNTALDNMFK RIPEEEFQLV
TAGMQISREV GGNLAEVLQR LSATLRKKIE MEGKIDALTS QGKMQGIVMT LLPVFIGVVL
YHMEPSAMGR ILTEPMGWAL IALVIIMLTS GYLSIRKIVA IDV
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