| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0557 |
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| Symbol | psd |
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| ID | 4924150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 631134 |
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| End bp | 631994 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162086 |
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| Product | phosphatidylserine decarboxylase |
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| Protein accession | YP_001092688 |
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| Protein GI | 127511491 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0688] Phosphatidylserine decarboxylase |
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| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.122246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACAAAT TGAAGATTGC CTTGCAATAC ATAATGCCGA AACACCTGCT CTCGCGACTC
GTGGGTAAAC TGGCAGCCGC CGAACTCGGC GCGGTAACGA CAAGCGTAAT TAAGTGGTTT
ATCAAGCAGT ATAAGATAGA CATGAGCGAG GCCGCACAGA GTGCACCCGA AGCCTACGCC
AGCTTCAACC AGTTCTTCAC CCGCGCCCTG AAGCCCGGTA TCCGCCCCCT GTGTGACGAT
GACGACTATA TCGTTCATCC GGTCGATGGC GCCGTCAGCC AATGCGGACC GATCAAAGAA
GGCCGTATCT TTCAAGCCAA GGGACATGAA TATTCGTCAC TTGCCCTTTT AGGCGATCAA
GCCGATGATG CCAAGCGCTT CGAAGGCGGC GACTTCGCCA CCATCTATCT GGCACCTAAG
GATTACCATA GAATCCACAT GCCGATTAAG GGCACCCTGT CTAAGATGAC CTATGTACCT
GGCGAGCTGT TTTCGGTTAA CCCACTAACG GCCGAGAATG TGCCCGGTCT GTTTGCCCGT
AACGAGCGCG TGGTGGCCAT CTTCGAAACC GAAATCGGCC CCATGGCCAT GGTCTTGGTT
GGTGCCACTA TCGTGGCCAG CATAGAAACT GTCTGGGCAG GTACAGTCAC GCCGCCGACA
GGCAAGAAAG TCTTCACCTG GGACTATCCA ACCGAGGGAC CAGAGGCGAT CACCTTGGAC
AAGGGCGAGG AGATGGGACG CTTCAAGCTG GGCAGCACAG TCGTCATGCT ATTTGCCAAA
GACGCGCTGG AACACTTTGC CGATGGCGTC GAGCCTAAGG CCGTTACCCG CATGGGTCAG
GCCTTCGCCA AAATCGATTA G
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| Protein sequence | MDKLKIALQY IMPKHLLSRL VGKLAAAELG AVTTSVIKWF IKQYKIDMSE AAQSAPEAYA
SFNQFFTRAL KPGIRPLCDD DDYIVHPVDG AVSQCGPIKE GRIFQAKGHE YSSLALLGDQ
ADDAKRFEGG DFATIYLAPK DYHRIHMPIK GTLSKMTYVP GELFSVNPLT AENVPGLFAR
NERVVAIFET EIGPMAMVLV GATIVASIET VWAGTVTPPT GKKVFTWDYP TEGPEAITLD
KGEEMGRFKL GSTVVMLFAK DALEHFADGV EPKAVTRMGQ AFAKID
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