Gene Shew_0544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0544 
SymboltolC 
ID4921172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp614493 
End bp615839 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content54% 
IMG OID640162073 
Productouter membrane channel protein 
Protein accessionYP_001092675 
Protein GI127511478 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.76987e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.601769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAAAA AAGGACAGCT AATGAAATTT AAGATCCGCA CCTTATGTGC AGCGTTGACT 
CTCGCGGCAA CGACTTCTGC CGTGCATGCC GACGATCTAC TGCAGATATA TCAGCAGGCC
CTTACCAATG ATCCTATTGC GCTCCAAGCA CAAGCGCAGC GCGACCGTCT CTACGAGCAG
ATCGAAGAGA ACCGCGCCCC CTTGCTACCT ACCATCAGCG CCAGCGTAGG CTATGGAAAG
AGCTGGACCA ATGTTGATGA TGACAAGTAC AACAGCGGAC TCGATGCTGG AGTGTCACTC
AAGCAGGTGA TCTATGATCA CAGCGCCTGG GTCGGACTCG ACCTCGCAGA GCTTGCGGCG
TCACAGGCCG ATGCAGCCTA TGCCTCGACA CTTCAGTCAC TCATCATTCG CGTAACAGGC
GCCTACTTCG ACGTCTTAGC CGCGAAAGAT AACTATGAAT TCAAGGGCGC CGAGAAGCGT
GCCATCGAGC GTCAGCTCGA GCAGACCAAG CAACGTTTTG CCGTGGGTCT CACCGCGATC
ACCGACGTAC ACGAGGCTCA GGCCCAGTAT GACTTGGCCC GTGCATCGGA AATCCTGGCG
GAAAACCAGC TGATCAACAG CTACGAAGCC CTCAGAGAGA TCACCGGCAT AGACCACAAG
TCTATCGACA TTCTGGATAC CACACGTTTC ACCGCGGTAC CGCCAACCCC AGCCATGCCA
AACGACTGGT TGAAGATGGC CGAGACCAGC AGTGTGGATC TGTTAACCAC GCGTATCGGT
AAAGATATCG CCCAGCAGAC CATCTCGCTC TACAAGGCGG GCCACATGCC GTCTCTGAGC
CTGAATGCCG GTTACACCAC CAACCTGAAT CAGAAGAATC AGGCAGGTGA TCTGAGCGAT
TACGACAACG CCAACGTGGG TCTGACCCTG AGCGTGCCAA TCTTCGAAGG CTTTAAGGTG
AGCTCTAAGG TTAACCAGGC GCAATACCAA TACGTAGAAG CCAGCGAGAA GATGGAACAG
ACCTACCGCA AGGTAGTGAA AGATGTGCGT AACAACTTCA ACAACGTTGG CGCCTCTATC
AGCTCTATCC GCGCCTATGA GCAATCGGTG ATCTCTTCTG AGAGTGCACT GAAAGCGACC
CAGGCAGGTT TCGAAGTCGG TACCCGTACC ATCGTTGACG TACTCAACCG TACCCGTGAC
CTGTATGACT CTAAGCGTCA GCTCTCTAAT GCCCGTTATG GCTATATCAA CTCTATCTTG
GCGTTGAAAC AAGCGACTGG CACCCTGAGC GAAGACGATG TCATCGCCAT CAACAATGGC
CTGAAGGCCC CTGAAGTCAG TCAGTAA
 
Protein sequence
MSKKGQLMKF KIRTLCAALT LAATTSAVHA DDLLQIYQQA LTNDPIALQA QAQRDRLYEQ 
IEENRAPLLP TISASVGYGK SWTNVDDDKY NSGLDAGVSL KQVIYDHSAW VGLDLAELAA
SQADAAYAST LQSLIIRVTG AYFDVLAAKD NYEFKGAEKR AIERQLEQTK QRFAVGLTAI
TDVHEAQAQY DLARASEILA ENQLINSYEA LREITGIDHK SIDILDTTRF TAVPPTPAMP
NDWLKMAETS SVDLLTTRIG KDIAQQTISL YKAGHMPSLS LNAGYTTNLN QKNQAGDLSD
YDNANVGLTL SVPIFEGFKV SSKVNQAQYQ YVEASEKMEQ TYRKVVKDVR NNFNNVGASI
SSIRAYEQSV ISSESALKAT QAGFEVGTRT IVDVLNRTRD LYDSKRQLSN ARYGYINSIL
ALKQATGTLS EDDVIAINNG LKAPEVSQ