Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0543 |
Symbol | |
ID | 4921171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 613667 |
End bp | 614425 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162072 |
Product | hypothetical protein |
Protein accession | YP_001092674 |
Protein GI | 127511477 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000718066 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.604176 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CACTACTTGC ATGTGCTCTG CTCGGGTCTT TGGCAGCGAC ATCTGCACAG GCGGCTACTG TAGTTGGCTT CAAGGTGGGC GGCGACTACT GGAACGCCGA CACCGAGGGT ACTTTTGCTC AGAAGGGCCA GGCTCAACAG GAGTTTGATT ACAGCTCTTC ATCTCAGGGT AGTATCTGGG TCGCCGTCGA GCATCCGATT CCTTTAGTGC CTAACCTGAA GATCCGCGAA AACCGTCTGG ATGCAGATGG CAAGGCGACT TTGACCGGCG ACTGGACATT CGGCGATCGC GTATTTAGCG ACGATGTGAC CACGGCAAGC AACCTGAGCA ATACCGATTT CGTGCTCTAC TATGAGCTGC TGGATAACGA CATAGTGGCA CTGGATCTCG GCGCCGCCTA CAAGAAGATG CATGGCTCTT TCCGCGTACA TCAGATCTCG CCATCTGGCG TAGTAGGGGC TTACGCGCAG AAAGATCTTA GCGACGGCAT CGTCATGGCT TACGCCAATG CCGAGGTGGG CATTCCAGGC CTGGGTCTGT ATGGTTTTGC CGACGTGATG CAAGGCATAG ACGAGAGCAG CGTCTACGAC TATCAAGTGG GTCTGGGTTG GCAGTTTGAC GGCGTGGCGC TAGACACCAA GGTACGTGTC GGTTACCGCG ACTTTAACTT CGACGTGAAC AACTTCGATG GTGTGACCGC CAACATGCAG TTCAAAGGCT ATTTCGCCGG GGTTGAGCTG GTCTTCTAA
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Protein sequence | MKKTLLACAL LGSLAATSAQ AATVVGFKVG GDYWNADTEG TFAQKGQAQQ EFDYSSSSQG SIWVAVEHPI PLVPNLKIRE NRLDADGKAT LTGDWTFGDR VFSDDVTTAS NLSNTDFVLY YELLDNDIVA LDLGAAYKKM HGSFRVHQIS PSGVVGAYAQ KDLSDGIVMA YANAEVGIPG LGLYGFADVM QGIDESSVYD YQVGLGWQFD GVALDTKVRV GYRDFNFDVN NFDGVTANMQ FKGYFAGVEL VF
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