Gene Shew_0492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0492 
Symbol 
ID4923440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp548543 
End bp550135 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content57% 
IMG OID640162021 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001092623 
Protein GI127511426 
COG category[N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein
[COG2703] Hemerythrin 
TIGRFAM ID[TIGR02481] hemerythrin-like metal-binding domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGATA AAATTGCGAA AAGGATCGCT TCGCTGAGCG CCCTGCAGTG GAGTCTGCTG 
ACCGGCCTGC CACTAGTGCC GATAGCCTAC CTCTTGATAC GCCAAGGCGC CTGGGGCTGG
CTGGCCCTGT TAGTTATCGA TTACCTATTT ATCCTCTCTG TGCTGCTAGC CCTGAATAGC
ATGTTCGGCA GGCTGCGCAG CGCCGCCATC CATCTCTCCG AGGGCGATCT CAGGGTAAGA
CTCGACACCC AGGAGGCCCT CGGCGGCCCG CTGTTTAAGG CCTTCAATCA GATAGGCGAA
GATGTGTCAC GTACCGTCTT CTCCCTGAGC AAGTCAGCCC AGCAGCTGGT CAGGGTGGCC
GATACAGTTC AGGCCGACTC CCAAGTCTCC AAAACCGGCG CCCTCAGACA GAAGGACGAT
GTCGAAGAGG CCAAACAGAT AGTCTCCAAG CTGTTTGAGA CCACCGCCGA AGTCTCCTCC
TTCTGCGAGT CCACCTCACA GCTGGCCAGC GAGTCCAAGC GTCAGGCGGA TCGTGGTAAG
CAGGAGATGC GCTCCCTCGA GACGGCGCTT GAAGATGTTG GCGAACAGTT TGCCGCCTCG
GACCAGAACT TCGAGCAGCT CAAGCAGGAG AGCCTGCAGA TAGGTCAGGT GGTAGAAACC
ATTAAGGGGA TTGCCGAGCA GACCAACCTA CTGGCGCTCA ATGCCGCCAT CGAGAGTGCC
CGCGCCGGCG AGCTGGGCCG AGGCTTCGCC GTGGTCGCCG ACGAGGTTCG CTCTCTGGCG
CTACGCACCC AGGTGGCCAC CGAAGATATC AACAACAAGA TAGTTAACCT GCAGACCCAG
ATAAATGATG CCATCGCGGC GATGCAGAAA AACCGCCAGA GCGTGCTACA CTCCCAGAGC
GTGGCCAACG AGGCCGAATC CCATTTCGAA GAGTTGGTGA GCCAGATAGA CGCCATCGAC
GCCCTGGGCC AGGAGATCGC CGTCGCCTCT CAGCATCAGG TAGAGCAGAC TCAGATGCTG
GAAACCTGTC TGGTGGAGGT CGACAAGGTA TCCGATGAAA ACGTCAAGGC TACCCAGGAG
ACACTGCTGG CCAGCATCAC GGTGCGTAAT TTAGCGGGTG AGATCGATTC CCTGCTTCAC
CGCTTTGCCA CCGACAGCGA GCAGATCGGC CGAGAGGATA CACGCCGCGA CAAGCTGATC
GAATGGAGCG ATGCCCTGGA TCTCAACCTC GCCGAGATCA ACCGTCAGCA CAAGACCCTG
GTACACCTGA TCAACGAGCT CTACTATCTG CTCAACAACA ACTATGGCCT GGCCTCCATC
AAGCGAGTGG TACAGGGGCT GATCGACTAC ACGGCCAATC ACTTCAAATA TGAAGAGACG
CTGTTCGAGC AGTTTGGCTA CCCTCAGGAT AAGCAGCATA CCGACTCTCA CCACCAGCTG
GTCGGCAAGG TGCTGGCGTT TCAGCGCCGG GTCGAACAGG GCGAAGATAT TGGCGATGAG
TTGATGGCAT TTCTGAAGAG CTGGCTCAGC CAGCACATCC AGAAGGAGGA TAAGGCCTAT
GTGGACTGCT TCAAGCACAA TGGCATGAAC TAG
 
Protein sequence
MIDKIAKRIA SLSALQWSLL TGLPLVPIAY LLIRQGAWGW LALLVIDYLF ILSVLLALNS 
MFGRLRSAAI HLSEGDLRVR LDTQEALGGP LFKAFNQIGE DVSRTVFSLS KSAQQLVRVA
DTVQADSQVS KTGALRQKDD VEEAKQIVSK LFETTAEVSS FCESTSQLAS ESKRQADRGK
QEMRSLETAL EDVGEQFAAS DQNFEQLKQE SLQIGQVVET IKGIAEQTNL LALNAAIESA
RAGELGRGFA VVADEVRSLA LRTQVATEDI NNKIVNLQTQ INDAIAAMQK NRQSVLHSQS
VANEAESHFE ELVSQIDAID ALGQEIAVAS QHQVEQTQML ETCLVEVDKV SDENVKATQE
TLLASITVRN LAGEIDSLLH RFATDSEQIG REDTRRDKLI EWSDALDLNL AEINRQHKTL
VHLINELYYL LNNNYGLASI KRVVQGLIDY TANHFKYEET LFEQFGYPQD KQHTDSHHQL
VGKVLAFQRR VEQGEDIGDE LMAFLKSWLS QHIQKEDKAY VDCFKHNGMN