Gene Shew_0476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0476 
Symbol 
ID4921683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp533870 
End bp534667 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content48% 
IMG OID640162005 
Producthypothetical protein 
Protein accessionYP_001092607 
Protein GI127511410 
COG category[S] Function unknown 
COG ID[COG1432] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00288] conserved hypothetical protein TIGR00288 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGACG TAGCGAAAAT AGCGGTGTTT ATCGACGCAG ATAACGCACC GGCAAGAAAG 
TTTGACGTGA TACTGGCTGA GCTAGCCAAA CATGGCGTGG TGAGTATTCG CAAAGCCTAC
GGCAACTGGA AAAGCCCAGG CCTGAAGCAC TGGGAAGACA TACTGCACGA ATATGCCATT
CAACCTATTC AACAGTTCGA CCTGACCAAA GGAAAGAACG CCACAGATAT CGCACTGGTA
ATCGATGCCA TGGACATCTT ATACACCAAA GATATAGATA TCATGTGCCT CATCTCCTCT
GACTGCGACT TCACTCCCTT AGTCACCAGA GTGCTCTCAG ACGGCAAAAA GGTATTCGGC
TTTGGCGAAC GTAAAGCCCC CACCGCTTTC GTCAACAGCT GCTCTCGCTT CCTCTACCTA
GACGCAGAAC CCGAAGTTGA AACCGAAGTA GAAGTGCCTA TAGAGAAAGT AACTGAGTCA
GCAACAGATA AAGAAGCAAA AACCACCACG CCAACCACAA AAGCCAGTGT TCCACGCAAA
CAAAACCTTA AAGGTGACAC CAAGTTAATT CACCTACTGC GACAGGCAAT TGAGGCAACA
GAAGAAGATG ACGGCTGGTC ACGCCTCGGC CCCATCGGCT CTCACATTTC GAACCACAGC
TCATTCGACC AAAGAAACTA TGGCTTCAAG AAACTCAGCG ATCTCTTCGC CGCCATAGAC
CTATTCGAGA TGCGAAAAAC CAACGGTTCA GTCATGTGGA TCAGAGAGAG CAAACGAGCC
AAGAAGAATG GGAAGTAA
 
Protein sequence
MQDVAKIAVF IDADNAPARK FDVILAELAK HGVVSIRKAY GNWKSPGLKH WEDILHEYAI 
QPIQQFDLTK GKNATDIALV IDAMDILYTK DIDIMCLISS DCDFTPLVTR VLSDGKKVFG
FGERKAPTAF VNSCSRFLYL DAEPEVETEV EVPIEKVTES ATDKEAKTTT PTTKASVPRK
QNLKGDTKLI HLLRQAIEAT EEDDGWSRLG PIGSHISNHS SFDQRNYGFK KLSDLFAAID
LFEMRKTNGS VMWIRESKRA KKNGK