| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0452 |
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| Symbol | |
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| ID | 4921661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 502430 |
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| End bp | 503401 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161981 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001092583 |
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| Protein GI | 127511386 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCATATG ACCAAAGCGC GATGAACGAA CTCCACTGGC TAATCGATAT GGTGCAGACC
ATAGAGGTGG GCCTGGTCGT GTTGGATCGC GACTACAACA TCCAGCTCTG GAACGGCTTC
ATGGAGAACC ATAGCGGCAT CTCACCCAAC TCCATCAAGG GCAAAAATAT ATTCGATCAA
TTCGACTACC TGCCGGCAAA CTGGCTGAAG CAGAAGATGG AGTCTGTGTT TCTGCTCAAG
AACCGCGCCT TCATCAGCTG GGAGCAACGT CCCTATGTGT TTAAGTTTGG CAACTATCGC
CCCATCACGG GCCGCGCCGA CTTCATGTAC CAGAATGTGA CCCTGCTGCC CCTCTCCTCC
CTCACGGGCC AGATCACCCA TATCAGCATG ATCATCTATG ACGTTACCGA TGTGGCGATC
AACAAGCTAC AGCTCAAGGC CGCCAACGAG CGCCTGGAGC ATCTGAGCCA GACGGATGGC
CTGACCCAGC TGCACAACCG CCGTCACTGG CAGCTGTGCA TGCAGAAAGA GTTCGACCGC
CATGCCCGCT ACGGCGAGCC CACCACACTG GTGATGTTCG ACATAGACCA TTTCAAACGG
ATCAACGACA CCTACGGCCA TATCGCCGGT GACAGGGTGA TCCAGCATGT CTCCCATATC
CTGCGTCAGT CCCTTCGGGA CACAGACTGC GCCGGCCGCT ACGGCGGTGA GGAGTTCTCC
GTGGTGCTGT CAAACACCAA TGCCGAGGCT GCACTGCATT TTGCCGATCG CCTGCGGGAG
AAGATCGAGG CCTCAGAGCT GAGGTTTGAG AGCGCCATCC TCAAGGTGAC GGTGAGTATC
GGCATCTGCG GCATAGACGA GCACCTGAGC AACAGCGCCC AGTGGCTAGG CCAAGCCGAC
AGCGCCCTCT ATCAGGCCAA GCAGAAGGGG CGTAACTGCT GCGTCATCTT CAATCCCGAT
GAAGCCGAAT AG
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| Protein sequence | MPYDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGISPN SIKGKNIFDQ
FDYLPANWLK QKMESVFLLK NRAFISWEQR PYVFKFGNYR PITGRADFMY QNVTLLPLSS
LTGQITHISM IIYDVTDVAI NKLQLKAANE RLEHLSQTDG LTQLHNRRHW QLCMQKEFDR
HARYGEPTTL VMFDIDHFKR INDTYGHIAG DRVIQHVSHI LRQSLRDTDC AGRYGGEEFS
VVLSNTNAEA ALHFADRLRE KIEASELRFE SAILKVTVSI GICGIDEHLS NSAQWLGQAD
SALYQAKQKG RNCCVIFNPD EAE
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