| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0439 |
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| Symbol | |
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| ID | 4920556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 489529 |
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| End bp | 490161 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161968 |
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| Product | CheD, stimulates methylation of MCP proteins |
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| Protein accession | YP_001092570 |
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| Protein GI | 127511373 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00596403 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCAG AGGCGACTCT TTTCCCCGTT CGGCCCGAAT TTGAGGCGAT TCCCCGCCAG
TGGGATAGCC GCCATGACGC CGTGGTGGCC CGGGTCGATC CCGGCAACTT CTATGTTACC
GCCCACGATG AGCTGATCTT CACCCGCCTG GGGTCCTGTG TCGCCGCCTG CATCTGGGAC
CCCTTGCTGG GCATCGGCGG CCTCAACCAT TTCCTGCTGC CCGAACGTCA ACTCCATGAA
GACTGGCATC AGCTGACCAG CTATACTTGC CGCTATGGCA ACTGGGCCAT GGAGCAGCTG
ATCAACAGCA TTTTGAGTCT GGGCGGGATG CGTAATCGCC TCAAGGCCAA GGTCTTCGGC
GGCGCGCAGA TGACGGCCAC CAGTGTGCTG AACGTCGGCG AGTCTAACAT CAGCTTCGTG
AAGAACTACC TCAAGACAGA AGGCATAGAG ATAGTAAGCG AAGATCTTGG TGGGCCCTGG
CCGCGTAAGG TGCTGTTTCA TCCCAACAGC GGCAAGGTCA AGCTGATGCG CCTGTCACCT
GAGCGGATCA GTAAGATGAT GAGCGAAGAG CAGCGCTACC TGAAACAGAT AGTCACGGCT
CAGGGGGAGA GCCAGGTGGA GCTGTTCGAT TAG
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| Protein sequence | MQAEATLFPV RPEFEAIPRQ WDSRHDAVVA RVDPGNFYVT AHDELIFTRL GSCVAACIWD
PLLGIGGLNH FLLPERQLHE DWHQLTSYTC RYGNWAMEQL INSILSLGGM RNRLKAKVFG
GAQMTATSVL NVGESNISFV KNYLKTEGIE IVSEDLGGPW PRKVLFHPNS GKVKLMRLSP
ERISKMMSEE QRYLKQIVTA QGESQVELFD
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