Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0424 |
Symbol | |
ID | 4924393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 476762 |
End bp | 478135 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161953 |
Product | amino acid carrier protein |
Protein accession | YP_001092555 |
Protein GI | 127511358 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1115] Na+/alanine symporter |
TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGGTA TTACTGAATT TGTCAGTACG ATCAACGGGT TCGTATGGGG TACTCCCATG CTCGTGATGA TCTTAGGCGT GGGACTCTTT CTCTCCTTTG GCTTGCGGTT GATGCCGATC CTTAAGCTGG GTACCGGCTT TAAGCTACTC TGGTCCGGAC GTATTCCCGA CAAGGATAAG CAGATGAAGG GGGAGATCAG CCCCTTCAAT GCCCTGATGA CCTCGCTGTC GGCCACCATA GGCACGGGTA ATATCGCAGG GGTGGCCACT GCCATCTTTA TCGGTGGCCC AGGTGCCCTG TTCTGGATGT GGTGTACCGC CCTGGTGGGT ATGGCTACTA AGTTTTCCGA GGCCGTGCTG GCGGTGAAAT ACCGCGAAGT GGATGATAAC GGCAACCATA TCGGCGGCCC AATGTACTAC ATCAAGAATG GTCTGGGCAG CAAGTGGGCC TGGCTGGGTA CCGCCTTCGC CCTGTTTGGA TCCTTTGCCG GTTTCGGTAT CGGCAACACG GTACAGGCCA ACTCTGTGGC CGATGCCCTT AACAGCAACT TCGGTGTGCC GACTTGGGTG ACGGGTCTGG TGCTCATGGT GCTGGTGGGC GCCGTGCTGA TGGGCGGTAT CAAGCGTATC GCCGATGTGG CGGGTAAGCT GGTGCCTCTG ATGACGGTAT TCTATATTGC CGCCGGTCTG TCGGTGATAG TGGTTAATGC CGCAGCGATC CCAGATGCTA TCGCCCTTAT CGTTCACAGC GCCTTCAATC CTGTGGCGGC CCAGGGCGGT TTTGCCGGGG CGGCAGTATG GGCGGCGGTG CGCTTTGGTG TGGCCCGCGG CGTCTTCTCT AACGAGGCCG GTCTGGGTAG TGCGCCTATC GCCCACGCGG CGGCGCAGAC CAATAACCCT GTGGCCCAAG GCCTAGTGGC TATGCTGGGT ACCTTCATCG ATACCCTGGT GGTCTGTACC ATTACCGGTC TGGCGATTGT CGTTTCCGGT GCCTGGACAT CGGGTGAGAA TGGCGCGGCG CTGACCTCCT ATGCCTTCTC TCACGCCCTG CCTATGGGCA ACTATATCGT GGCTATCGCC CTCTCTATCT TCGCCTTCAC CACCATCCTG GGTTGGAGCG TCTATAGCGA GAAGTGTGTG CAGTACCTGT TTGGTGTGCG CGCGGTAAAA CCCTTCAGAG CCATCTGGGT CATTGTTGTT CCCCTAGGGG CCGTCAGCTC GCTCGACTTC ATCTGGCTGC TGGCCGATAC CCTGAACGCC ATGATGGCGA TACCAAACCT GATCGCCCTG TCGCTGCTTA GCCCTGTGGT CTTCGGCTTG ACCCGTGAGT ACTTCATCAA GAAGCGTCAG CAGGAAGCAG AAGCCAGTAG CTAA
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Protein sequence | MEGITEFVST INGFVWGTPM LVMILGVGLF LSFGLRLMPI LKLGTGFKLL WSGRIPDKDK QMKGEISPFN ALMTSLSATI GTGNIAGVAT AIFIGGPGAL FWMWCTALVG MATKFSEAVL AVKYREVDDN GNHIGGPMYY IKNGLGSKWA WLGTAFALFG SFAGFGIGNT VQANSVADAL NSNFGVPTWV TGLVLMVLVG AVLMGGIKRI ADVAGKLVPL MTVFYIAAGL SVIVVNAAAI PDAIALIVHS AFNPVAAQGG FAGAAVWAAV RFGVARGVFS NEAGLGSAPI AHAAAQTNNP VAQGLVAMLG TFIDTLVVCT ITGLAIVVSG AWTSGENGAA LTSYAFSHAL PMGNYIVAIA LSIFAFTTIL GWSVYSEKCV QYLFGVRAVK PFRAIWVIVV PLGAVSSLDF IWLLADTLNA MMAIPNLIAL SLLSPVVFGL TREYFIKKRQ QEAEASS
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