| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0413 |
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| Symbol | |
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| ID | 4922608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 466858 |
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| End bp | 468030 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640161942 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001092544 |
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| Protein GI | 127511347 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.425702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCAAC TCATCACGCG GGAGCTCAGG CGGCTGTGGC AGTCGCCCTG GCAGCTCGCC
CTGGTCAGCT ATCTGCCATT GCTGGGTACG CTCGCCCTGT GGTGGCTGTT TAGCGCCGGG
CTGCCTCGCG CCCTGCCTGT GGCCGTGGTG GATCAGGATC AGAGCCAGCT GAGCCGCATG
CTGGTGCGTC AGTTGAGTGC CAACTCGGTG ATCAGCCCAG TGAGCTATCA GGATATCGGC
CAGGCACAGG CCGCCATGGA GAGGGCCGAG GCCTATGCCA TGGTGGTGCT CCCCTTCAAG
TTGAATCAGG ACCTGATGAT AGGGCATCAG CCCAGCATCG ATATCCGTTA CAACGCCCAG
TTTCTGCTGG TGGGCAAGCT GCTCTCCAGC CAGATCCAGC TCAGCCTGGC CGATGGCCTC
AAACAGAAGG CGAGGCTGAA GCAGCTGGCA TCTGGCGTGC CGCCTGTGCA GGCGGAGATT
AACCTGAATC TGATAAAGAC CCAGAGCAGC GCACTCTATA ACGCCAACAA CAACTATGTG
GCCTTCCTGG TGCCGCCGAT ATTGATCGCC CTGGTGCAGA TAGTGGCCAT GCTGGTGTTT
GCCAATGCCC TTACCGAGGA GCTGAGGCGC GAGACCCTGG CCGAGTGGTT TAGCCTAGGC
ACCTACCGGG TGCTGCTGAG TAAGGTCTTG GTCTATACCC CACTGCTGAT GTTGCAGCTG
GGGCTTGTCT ACGCCTGGCT CTATGGCTAT CTGGGATTGC CGATGCGCGG CGGCCTGGGT
CAGCTGCTCA TCGCACAGCT GGTGATGCTC CTGGCTGTGT GGCTTATTGT GTTGACCATC
TTCGCCCTGC TGCAAGATTC GGCCCGGGTG ATCAGCTTTT GCACCGCCTT GTTCGCGCCC
TCCTTCGCCT TCATGGGGGT GACTTTCCCC ACCCACGAGA TGCCGCTTCT GGCGCAGTGG
TGGCGACAGA TCATGCCCTC GAGCCACTAT GTCAATACCC ATATCGGCGT CATCGCCTAT
GGTCAGGAGA CTCAGGCATT AGTCTCCCAG CTGTCGAGCT ACTGGGGCTT CCTGCTGTTG
CTGCCGGTGA TCGCCTTGAT GCTGGCTAAG ATGCGCCGGG AACAGACTGG TGAGCAGTTG
GACCAGGCGC AGATAGTGGA GGGGCAGGGA TGA
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| Protein sequence | MGQLITRELR RLWQSPWQLA LVSYLPLLGT LALWWLFSAG LPRALPVAVV DQDQSQLSRM
LVRQLSANSV ISPVSYQDIG QAQAAMERAE AYAMVVLPFK LNQDLMIGHQ PSIDIRYNAQ
FLLVGKLLSS QIQLSLADGL KQKARLKQLA SGVPPVQAEI NLNLIKTQSS ALYNANNNYV
AFLVPPILIA LVQIVAMLVF ANALTEELRR ETLAEWFSLG TYRVLLSKVL VYTPLLMLQL
GLVYAWLYGY LGLPMRGGLG QLLIAQLVML LAVWLIVLTI FALLQDSARV ISFCTALFAP
SFAFMGVTFP THEMPLLAQW WRQIMPSSHY VNTHIGVIAY GQETQALVSQ LSSYWGFLLL
LPVIALMLAK MRREQTGEQL DQAQIVEGQG
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