| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0392 |
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| Symbol | |
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| ID | 4921800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 442454 |
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| End bp | 444214 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161921 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001092523 |
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| Protein GI | 127511326 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACCCA AGTTAAAGAT GCGCCTCGGC GACTTATTGG TACAGGAAGC GATCATCAGC
GAGGCGCAGC TGGGCCAGGC CCTGGCCGAG CAGAGAAATA CCGGCAAGAA GCTGGGTCGC
ACCCTGATCG ATCTCTCCTG CATCACAGAA GAGCAGCTGC TTAAGTTTCT GTCGCAGCAG
CTTAATATTC CCTTTTTGGA TATCAGCCGC CGGGCGATTC CGCCTCAAGT CGTGAATCTT
CTACCCGAGG TGCAGGCCCG TCGTTATCGC GCCCTGGCGG TGGAAGATAA TGGCGACCAT
GTGCTGGTGG CCATGAGCGA CCCTGCCGAT CTGCAGGCGA TGGACAATAT CGAGGTCTTG
CTGGCGCCCA AGGCGATTAA GATCGCCGTG GTTACCGAGA CCCAGCTGCT GGAGGCCTTC
GACAACCTGT ATCGCCGCAC CGGGGAGATC GCCCAGATCG CCGGTAAGCT GGAGGAGGAA
TATGCCGCCG ACGATCAGTT CGATCTCGCC AGCCTGACCG ATGCCGACAG CGACAACGAG
ACCACTGTGG TTAAGCTACT GCAGTCGATC TTCGAAGACG CGGTGCAGAT GCGCGCCTCA
GATATTCATA TCGAGCCCGG TGACAAGGTG CTGAGGATCC GCCAGCGTAT CGATGGTCAG
CTGCAAGAGA ATACCCTGCA GGAGGTGAAT ATCGCCTCGG CACTGGTGCT GCGCCTCAAG
TTGATGGCGG GCTTGGATAT CTCAGAGAAG CGTCTGCCCC AGGATGGTCG TTTCCACATG
GAGATCAAGG GACACAAGAT AGACGTGCGT ATGTCGACCA TGCCTATCTA TCACGGCGAG
TCAGTGGTGA TGCGTCTGCT GGACCAGTCT GCGGGCTTGC TGACTTTAGA TGAGACCGGC
ATGCCGGCCG AGATGCTGGC GCGGGTGCGC AGACAGATCA AACGCCCCCA CGGCATGCTG
CTGGTAACCG GGCCTACGGG TAGCGGTAAG ACCACGACGC TTTATGGCGT GTTGAGTGAG
CTCAACACCG CCGATCGCAA GATCATCACG GTAGAAGATC CGGTGGAGTA TCAGCTGCCG
CGTATCAATC AGGTACAAGT TAACCATAAG ATAGGCTTAG ATTTTTCCAA CGTACTGCGT
ACCACCTTGC GTCAGGACCC CGATATCATC ATGGTGGGTG AGATGCGTGA CCAGGAAACG
GTGGAAATTG GCCTCAGGGG CGCGCTGACA GGTCACTTTG TGCTGTCGAC CCTGCATACC
AATGATGCGG TCACCTCTGC CCTGCGTCTG CTGGACATGG GCGCCGCCAG CTATCTGGTG
GCCAGTGCGC TTAGGGTGAT CATCGCTCAG CGTCTGGTGC GCCGGGTCTG TCACAAGTGT
GCCCAGCCCT ATGATGCTAG CGCCGCCGAT CATGCCTGGC TTAGCAGCAT AAGTGGTCGC
GACTTCAGCC AGGCCAAGTT TCGTATTGGC ACCGGCTGTC AGAGCTGTAA CGGTAGCGGC
TATCGTGGCC GTATCGGTGT GTTCGAGATC CTGGAGCTGG ATGAGAAGAT GATCGATGCG
ATGCGTAGCG GCAATCCCCA GGCGTTTGCC CAGGCCGCCT ACCAGAGCCC GAACTTTACT
CCGCTGGCCG AGTCGGCGCT CAACTACCTT GCTGAGGGCA TGACCACTAT GGAAGAGGTG
GCCAAGCTTA TCGAAGATGC CAGCGATGCC CAGGTACCCA TCTCGCAGGA GATGATCCAT
CAACATGAGA TTGAGGGCTA A
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| Protein sequence | MKPKLKMRLG DLLVQEAIIS EAQLGQALAE QRNTGKKLGR TLIDLSCITE EQLLKFLSQQ
LNIPFLDISR RAIPPQVVNL LPEVQARRYR ALAVEDNGDH VLVAMSDPAD LQAMDNIEVL
LAPKAIKIAV VTETQLLEAF DNLYRRTGEI AQIAGKLEEE YAADDQFDLA SLTDADSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGDKV LRIRQRIDGQ LQENTLQEVN IASALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLDETG
MPAEMLARVR RQIKRPHGML LVTGPTGSGK TTTLYGVLSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHKC AQPYDASAAD HAWLSSISGR
DFSQAKFRIG TGCQSCNGSG YRGRIGVFEI LELDEKMIDA MRSGNPQAFA QAAYQSPNFT
PLAESALNYL AEGMTTMEEV AKLIEDASDA QVPISQEMIH QHEIEG
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