| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0389 |
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| Symbol | |
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| ID | 4923151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 438699 |
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| End bp | 440390 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161918 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001092520 |
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| Protein GI | 127511323 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCGA TGAAAACCAT AACACCTCTG CTCGTGCTGA TGTTAGCCGC CTGTCAGACA
ACGGATCGTC CCCAGCCTGT CGAGTCGAAA TCGGCGATCG ATAGCTCGAT TGCCGCGGCG
CAGAACAAGC CGCAAATGCC ACCACCGGCG GCCGTGATGC CAGATTCGGT GCAGCGTGAG
CTGCAGTCAT CGGCCCTGCT CGGATCTTTG ACCCCAAGCC AGCCGAGCGA GCGACGCTTC
GATGTGTCGG CCAAGGATGT CGATGCCAAG GTCTTCTTCC CTAGCCTGGT ACAGGGCACG
CCGCTGAGCG TGGCCGTGCA CCCTAATGTG ACAGGTACAG TCTCCCTGTC CCTCAAGGGG
GTGACCCTGA GCGAGGCGCT GCAGGTGGTC GAAGATATCT ATGGTTACGA GGTGAGCCGA
GAAGGACGTA TCCTGCGTGT CTTCCCTGCT GGCATGCGCA CCGAGACCTT CCCGCTCAAC
TATCTCTACA TGGAGCGTCA GGGCCTGTCG CTGACCTCGG TGAACTCAGG GCGGATCTCG
GACAACAATA ACAACCGTAA TAACAACGGT AACAACGGTA ACAACAGCAA TAATTACAAC
AACAATAACT CGAATAACAA CGGTGGCGAC AGCAATAGCA ACAATAGCAA CGAGACCACT
AACGGCACCT TTATCCGCTC CAAGACCAAG ACAGACTTCT GGGGTGAGCT GAAAGAGACG
CTGGAATCTA TCATAGGCAA CACGGGTGAC GGCCGTCAGG TGGTGGTCAG CCCGCAGGCT
GGCCTGGTGA CCATCAGGGC CTATCCCAAC GAGCTGCGTC AGGTGAAGAC CTTCCTTAAG
ACCGCCGAGA GCCATCTGCA GCGTCAGGTG ATCCTCGAGG CCAAGGTGCT CGAGGTGACC
CTGTCTGACG GTTATCAGCA GGGGATCCAT TGGGAAAGCG TGCTGGGTCA GAGTGGTAAC
AACAGCATCG AGTTTGGTAC CTCGCCCGCG CCCGATGGTC TGGGGGATGT GATCACCTCG
GCCATAGGTG GCATCACCTC CTTGCAGATC AAGGGCAAAG ACTTCAGCAC CATGATTAAC
CTGCTCGATA CCCAAGGCGA TGTGGATGTG CTGTCGAGCC CAAGGGTGAC GGCCTCGAAT
AACCAGAAGG CGGTGATCAA GGTTGGTCGA GATGAGTATT TCGTGACAGA TGTGTCTTCG
ACCACGGTAG CGGGCACCAC GCCGGTCACC ACACCGGAAG TGGAGCTGAC GCCGTTTTTC
TCTGGCATCG CGCTGGATGT GACGCCGCAG ATCGACGAGG AGGGCAGTGT GCTGCTGCAC
ATCCACCCAT CGGTTATCGA TATCAAGGAG CAGAACAAGT CGATCAAGGT ATCAGACAGC
ACACTCGAGC TGCCGCTGGC CCAGAGCGAG ATCCGCGAGT CGGACACTGT CATTAAGGCC
AATACCGGCG ATGTGGTGGT GATCGGCGGC CTGATGAAGA GCGAAAATAT CGAGCTGATC
TCTAAGGTGC CGCTGCTGGG GGATATTCCG TTTCTGGGCG AAGCCTTTAC CAATCGTTCC
AACTCGCTAC GCAAGACTGA GCTGGTGATC CTGCTCAAGC CGACCGTGGT GGGGGCCGAG
ACCTGGCAGA CCGAGCTGCA ACGCTCCAAG GCCCTGCTGG ATCGCTGGTA CCCAGAAGAG
AAGCAGGAGT AG
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| Protein sequence | MTAMKTITPL LVLMLAACQT TDRPQPVESK SAIDSSIAAA QNKPQMPPPA AVMPDSVQRE
LQSSALLGSL TPSQPSERRF DVSAKDVDAK VFFPSLVQGT PLSVAVHPNV TGTVSLSLKG
VTLSEALQVV EDIYGYEVSR EGRILRVFPA GMRTETFPLN YLYMERQGLS LTSVNSGRIS
DNNNNRNNNG NNGNNSNNYN NNNSNNNGGD SNSNNSNETT NGTFIRSKTK TDFWGELKET
LESIIGNTGD GRQVVVSPQA GLVTIRAYPN ELRQVKTFLK TAESHLQRQV ILEAKVLEVT
LSDGYQQGIH WESVLGQSGN NSIEFGTSPA PDGLGDVITS AIGGITSLQI KGKDFSTMIN
LLDTQGDVDV LSSPRVTASN NQKAVIKVGR DEYFVTDVSS TTVAGTTPVT TPEVELTPFF
SGIALDVTPQ IDEEGSVLLH IHPSVIDIKE QNKSIKVSDS TLELPLAQSE IRESDTVIKA
NTGDVVVIGG LMKSENIELI SKVPLLGDIP FLGEAFTNRS NSLRKTELVI LLKPTVVGAE
TWQTELQRSK ALLDRWYPEE KQE
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