| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0363 |
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| Symbol | |
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| ID | 4921315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 411699 |
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| End bp | 412376 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161891 |
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| Product | nucleotidase |
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| Protein accession | YP_001092494 |
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| Protein GI | 127511297 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0192127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACC AGTGGATATT ATTTGACGCC GATGAAACCC TGTTTCATTT CGACGCCTTT
AAAGGATTAC AGCTGATGTT TTCGCGCTTC GGTGTGGATT TCACCCTAGC CGATTTCGAA
GAGTATCAAA CGGTTAACCT GCCTTTGTGG GTGGATTATC AAGACGGCAA GATCAGCGCC
CGTCACCTGC AGGTGACCCG TTTCGAACGT TGGGCCGAGA AGCTTTCTGT GACCGCCGAG
CACCTTAATT CGGCGTTTCT CACGGCCATG GCCGACATCT GCACCCTGCT GCCTGGCGCC
GCCGAGCTGG TGGATGCCCT CTATGGCAAG GTGAAGATGG GAATCATCAC CAATGGCTTT
ACCGACCTGC AGACGGTGCG TCTGGAGCGT ACCGGCTTGC TGCATGCCTT CTCGCCCGTG
GTGATCTCGG AAGAGGTGGG GGTCGCTAAA CCCGATGTGG CGATCTTCGA ACACGCCCTG
TCGCAGATGG CTCATCCGCC CAGAGAGCAT GTGTTGATGG TGGGAGATAA TCCCCATTCG
GATATTCAGG GTGGGCTTAA CGCCGGCTTC GATACCTGTT GGCTCAACCG CGCCAGTCAG
CCAGTCCCCG AGGGGATCAC GCCTCACTAT CAGGTGGCAT CACTCACCGA GCTGCAACAC
CTGCTGCTTA AGGGCTAA
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| Protein sequence | MKYQWILFDA DETLFHFDAF KGLQLMFSRF GVDFTLADFE EYQTVNLPLW VDYQDGKISA
RHLQVTRFER WAEKLSVTAE HLNSAFLTAM ADICTLLPGA AELVDALYGK VKMGIITNGF
TDLQTVRLER TGLLHAFSPV VISEEVGVAK PDVAIFEHAL SQMAHPPREH VLMVGDNPHS
DIQGGLNAGF DTCWLNRASQ PVPEGITPHY QVASLTELQH LLLKG
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