Gene Shew_0344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0344 
Symbol 
ID4923423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp391653 
End bp393173 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content59% 
IMG OID640161872 
ProductNa+/H+ antiporter NhaC 
Protein accessionYP_001092475 
Protein GI127511278 
COG category[C] Energy production and conversion 
COG ID[COG1757] Na+/H+ antiporter 
TIGRFAM ID[TIGR00931] Na+/H+ antiporter NhaC 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCTC ATCAGCAGTC GCCAGAACAG CCTGGCAGAG ATTCGAGTCC CGCGTCGGCT 
AAACGCCACA AGCAGCCGAC GCTACTAGAT GCCCTGATCC CCATTATCGC CCTGGTCTGT
ATGTTAACGG CCTCTGTGTA TCTCTTCTCG TCCGACAGCT CCTATGGCGC CAACCAGATC
GCCCTGATCA TGGCGGCCTG TATCACTCTG GTTATCGGGG TGAAGAACGG CTATAGCTGG
AAGGAGATGG AGGCGGGTAT CGTCAAGAGT GTCTCCCTGG CCACAGGCGC TCTGTTGATC
CTGTTTTCGG TCGGCTCCCT GATCGGCACC TGGATCTTGG CCGGAACCGT GCCGACCATG
ATCTTCTATG GTATGAAGAT CTTAAACCCA GATTATTTCT ACGCCGCCTC CTGCCTACTG
TGCGCCGTGG TGGCCCTGAG TATCGGTAGC TCCTGGACGG TCGCCGGCAC CTTAGGTATC
GCCCTTATCG GTGTCGCCGG TGCCATGGGG CTGAGCGTCG AGATCACCGC CGGCGCCATC
ATCAGCGGCG CTTATTTTGG TGACAAGATG TCGCCCATGT CAGACACCAC TAACCTGGCG
CCCGCGGTTG CCGGCAGCGA GCTGTTTGGC CATATTCGCC ACATGGTGTG GACCACGACT
CCGAGCATAT TGCTTGCCCT GATAGGCTTT TTGTTTATCG GCCTTAACAG CGACAGCAGC
AGCGTCGCGA CGGATCTGGC TGCGACCATG GCACGCATCG AGACCCAGTA TCATCCCGGC
CTGCATCTGC TACTGCCCCT GCTGGTGGTG TTAGTGCTGG CCTACAAGAA GTTACCCGCC
TTCCCGACCG TGATTCTGGG TACCCTGGCC GGCGCCATCT GCGCGGCACT GTTTCAGTTC
GATGGGGTGA TCAAGTTCGT CAACGACGAC AGCCTGCCGA CTATGGTCGC CCTGGTGAAG
GGGATCTGGG TCGCCATGTT CGATGGCTAC ACCGCCAACA CAGGGGACAA AACACTCGAC
AGCCTGCTGA GTCGCGGTGG CATGAGCAGC ATGGTCAATA CCGTCTGGTT GATCCTATGC
GCCATGGCCT TCGGCGGCGT GATGGAAAAG ACAGGTCTGC TGCAGCGTCT GTTGCAAGGG
GTGCTGCGTC TGGTGAAATC CAGCGGCAGC CTGATCATCA CCACCCTGGC GAGCTGTATC
GGCGCCAACT TGATCACGGG CGATCAGTTT ATTGCCATCT TGTTGCCGGG TCGTATGCTC
AAAGTCGAGT ATGAGAAGCA TGGTCTGGCG CCGGTTAACC TGAGCCGCGC ACTGGAAGAT
TCGGCCACCA TCACCAGCCC GTTGGTGCCC TGGAATACTT GCGGCGCCTA CATGGCCAGC
ACCTTAGGCG TGGCGACCAT CGCCTATCTG CCTTTCGCCT TCTTTAACCT CATCTGTCCT
TTCGTCAGCG CGGCCTACGC CTACTATGAC ATCAAGATAG AGCGACTGGC GGAGAGTGAA
GCCGTGGAGG CCGTGGCCTA G
 
Protein sequence
MTSHQQSPEQ PGRDSSPASA KRHKQPTLLD ALIPIIALVC MLTASVYLFS SDSSYGANQI 
ALIMAACITL VIGVKNGYSW KEMEAGIVKS VSLATGALLI LFSVGSLIGT WILAGTVPTM
IFYGMKILNP DYFYAASCLL CAVVALSIGS SWTVAGTLGI ALIGVAGAMG LSVEITAGAI
ISGAYFGDKM SPMSDTTNLA PAVAGSELFG HIRHMVWTTT PSILLALIGF LFIGLNSDSS
SVATDLAATM ARIETQYHPG LHLLLPLLVV LVLAYKKLPA FPTVILGTLA GAICAALFQF
DGVIKFVNDD SLPTMVALVK GIWVAMFDGY TANTGDKTLD SLLSRGGMSS MVNTVWLILC
AMAFGGVMEK TGLLQRLLQG VLRLVKSSGS LIITTLASCI GANLITGDQF IAILLPGRML
KVEYEKHGLA PVNLSRALED SATITSPLVP WNTCGAYMAS TLGVATIAYL PFAFFNLICP
FVSAAYAYYD IKIERLAESE AVEAVA