Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0344 |
Symbol | |
ID | 4923423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 391653 |
End bp | 393173 |
Gene Length | 1521 bp |
Protein Length | 506 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640161872 |
Product | Na+/H+ antiporter NhaC |
Protein accession | YP_001092475 |
Protein GI | 127511278 |
COG category | [C] Energy production and conversion |
COG ID | [COG1757] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00931] Na+/H+ antiporter NhaC |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTCTC ATCAGCAGTC GCCAGAACAG CCTGGCAGAG ATTCGAGTCC CGCGTCGGCT AAACGCCACA AGCAGCCGAC GCTACTAGAT GCCCTGATCC CCATTATCGC CCTGGTCTGT ATGTTAACGG CCTCTGTGTA TCTCTTCTCG TCCGACAGCT CCTATGGCGC CAACCAGATC GCCCTGATCA TGGCGGCCTG TATCACTCTG GTTATCGGGG TGAAGAACGG CTATAGCTGG AAGGAGATGG AGGCGGGTAT CGTCAAGAGT GTCTCCCTGG CCACAGGCGC TCTGTTGATC CTGTTTTCGG TCGGCTCCCT GATCGGCACC TGGATCTTGG CCGGAACCGT GCCGACCATG ATCTTCTATG GTATGAAGAT CTTAAACCCA GATTATTTCT ACGCCGCCTC CTGCCTACTG TGCGCCGTGG TGGCCCTGAG TATCGGTAGC TCCTGGACGG TCGCCGGCAC CTTAGGTATC GCCCTTATCG GTGTCGCCGG TGCCATGGGG CTGAGCGTCG AGATCACCGC CGGCGCCATC ATCAGCGGCG CTTATTTTGG TGACAAGATG TCGCCCATGT CAGACACCAC TAACCTGGCG CCCGCGGTTG CCGGCAGCGA GCTGTTTGGC CATATTCGCC ACATGGTGTG GACCACGACT CCGAGCATAT TGCTTGCCCT GATAGGCTTT TTGTTTATCG GCCTTAACAG CGACAGCAGC AGCGTCGCGA CGGATCTGGC TGCGACCATG GCACGCATCG AGACCCAGTA TCATCCCGGC CTGCATCTGC TACTGCCCCT GCTGGTGGTG TTAGTGCTGG CCTACAAGAA GTTACCCGCC TTCCCGACCG TGATTCTGGG TACCCTGGCC GGCGCCATCT GCGCGGCACT GTTTCAGTTC GATGGGGTGA TCAAGTTCGT CAACGACGAC AGCCTGCCGA CTATGGTCGC CCTGGTGAAG GGGATCTGGG TCGCCATGTT CGATGGCTAC ACCGCCAACA CAGGGGACAA AACACTCGAC AGCCTGCTGA GTCGCGGTGG CATGAGCAGC ATGGTCAATA CCGTCTGGTT GATCCTATGC GCCATGGCCT TCGGCGGCGT GATGGAAAAG ACAGGTCTGC TGCAGCGTCT GTTGCAAGGG GTGCTGCGTC TGGTGAAATC CAGCGGCAGC CTGATCATCA CCACCCTGGC GAGCTGTATC GGCGCCAACT TGATCACGGG CGATCAGTTT ATTGCCATCT TGTTGCCGGG TCGTATGCTC AAAGTCGAGT ATGAGAAGCA TGGTCTGGCG CCGGTTAACC TGAGCCGCGC ACTGGAAGAT TCGGCCACCA TCACCAGCCC GTTGGTGCCC TGGAATACTT GCGGCGCCTA CATGGCCAGC ACCTTAGGCG TGGCGACCAT CGCCTATCTG CCTTTCGCCT TCTTTAACCT CATCTGTCCT TTCGTCAGCG CGGCCTACGC CTACTATGAC ATCAAGATAG AGCGACTGGC GGAGAGTGAA GCCGTGGAGG CCGTGGCCTA G
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Protein sequence | MTSHQQSPEQ PGRDSSPASA KRHKQPTLLD ALIPIIALVC MLTASVYLFS SDSSYGANQI ALIMAACITL VIGVKNGYSW KEMEAGIVKS VSLATGALLI LFSVGSLIGT WILAGTVPTM IFYGMKILNP DYFYAASCLL CAVVALSIGS SWTVAGTLGI ALIGVAGAMG LSVEITAGAI ISGAYFGDKM SPMSDTTNLA PAVAGSELFG HIRHMVWTTT PSILLALIGF LFIGLNSDSS SVATDLAATM ARIETQYHPG LHLLLPLLVV LVLAYKKLPA FPTVILGTLA GAICAALFQF DGVIKFVNDD SLPTMVALVK GIWVAMFDGY TANTGDKTLD SLLSRGGMSS MVNTVWLILC AMAFGGVMEK TGLLQRLLQG VLRLVKSSGS LIITTLASCI GANLITGDQF IAILLPGRML KVEYEKHGLA PVNLSRALED SATITSPLVP WNTCGAYMAS TLGVATIAYL PFAFFNLICP FVSAAYAYYD IKIERLAESE AVEAVA
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