Gene Shew_0325 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0325 
Symbol 
ID4921970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp371031 
End bp371924 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content59% 
IMG OID640161853 
Producttyrosine recombinase XerC 
Protein accessionYP_001092456 
Protein GI127511259 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGACG ACTGGGTGCA GGAATTTGTC TCATATCTGG TCAGTGAGCG GCAGCTCTCT 
CCCCACACGG TCAGAAACTA TCGCTTCGAG CTCGAGCGGG TCGGCGAACT CCTCCCCGAG
AATTTTATCT GGGCAGAGGT CAGCGACGAA CAGCTGCAAG CCGTGCTCAA TAAGCTGCAC
CGCAAGGGGC TGGGGCCTCG CTCCATCGCC CTGACGCTGT CGGCCCTCAA GCAGTTTTGT
CATTATCTGC TGCAAGAGGG CTATATCAAA AAAGATCCCT GCCTGAACCT CAGCGCCCCC
AAACAGCAAA AGCCCCTGCC TAAGAATATG GATCTCGATT CCGTGACCCA TCTTCTGTCT
ATCGAGGGGG ACGATGCGCT GGCGTTGCGG GATAAGGCGA TCATGGAGCT GTTCTACTCT
TCTGGCTTGC GTCTGGCCGA GCTGGCGGCC CTGGATACCC GAGATATCGC CAGCGGCGAG
CATCAGGTCA AGGTCATGGG TAAGGGCAGC AAGGAGCGTA TCGTACCCAT TGGCCGCATG
GCACTGAGTG CCATCGACGA CTGGCTCAAG GTGCGCTCGC TTTTGCCCTG TGAAGACGAC
GCCCTGTTTG TCACCGCCAA GGGCAAACGC CTCGCCCACA GGAGCATACA GGCCAGGCTA
AACAAGTGGG GTCAGCTGCA GGGGCTAAAT GCCCGGGTGC ATCCCCATAA GCTGCGCCAC
TCCTTTGCAA CCCATATGCT GGAATCTAGC GCGGATCTCA GGGCGGTGCA GGAACTGCTG
GGGCATGCCA ACCTGTCGAC GACTCAGGTC TACACCAGCC TGGACTTCCA ACACCTAGCC
AAGGTCTACG ACGGCGCCCA TCCCAGGGCG AAGAAGCGGG GTGGTAATGG TTAG
 
Protein sequence
MSDDWVQEFV SYLVSERQLS PHTVRNYRFE LERVGELLPE NFIWAEVSDE QLQAVLNKLH 
RKGLGPRSIA LTLSALKQFC HYLLQEGYIK KDPCLNLSAP KQQKPLPKNM DLDSVTHLLS
IEGDDALALR DKAIMELFYS SGLRLAELAA LDTRDIASGE HQVKVMGKGS KERIVPIGRM
ALSAIDDWLK VRSLLPCEDD ALFVTAKGKR LAHRSIQARL NKWGQLQGLN ARVHPHKLRH
SFATHMLESS ADLRAVQELL GHANLSTTQV YTSLDFQHLA KVYDGAHPRA KKRGGNG