| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0292 |
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| Symbol | |
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| ID | 4920565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 311545 |
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| End bp | 313395 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640161816 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001092423 |
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| Protein GI | 127511226 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAC TACGTTCAGC TACCAGTACT CAAGGGCGCA ACATGGCCGG GGCGCGCGCC
CTCTGGCGGG CGACCGGGGT AAAAGACAGC GATTTTGGTA AGCCGATTGT CGCCATTGCC
AACTCCTTTA CCCAGTTTGT GCCGGGTCAC GTGCATCTTA AGGATATGGG CTCGCTGGTG
GCTGGTGCCA TCGAAGAGGC GGGCGGTATC GCCAAAGAAT TCAATACTAT CGCCGTGGAT
GATGGCATCG CAATGGGCCA CGGCGGCATG CTCTACTCTC TGCCATCGCG TGAGCTGATC
GCCGACAGCG TCGAGTATAT GGTCAACGCC CACTGCGCCG ACGCCCTGGT GTGTATCTCC
AACTGTGACA AGATCACCCC AGGCATGCTG ATGGCGGCGC TCAGACTCAA CATCCCCGTG
GTGTTTGTCT CCGGCGGCCC CATGGAGGCG GGTAAGACTA AGCTATCGGA CAAGCTGATA
AAACTGGATC TGGTGGATGC CATGGTGGCC GCGGCCGATG ATCGCGTCTC GGACGAAGAC
AGCGAGAAGA TAGAGCGTAG CGCCTGCCCA ACTTGTGGCT CCTGCTCGGG CATGTTTACC
GCCAACTCGA TGAACTGCCT GACCGAGGCC TTAGGCTTGT CGCTGCCGGG CAATGGCTCG
CTGCTGGCGA CCCACAGTGA TCGCCGCGAA CTCTTCTTAG AGGCCGGTCG CCGGGTGATG
GCGCTGGCTA ATCGCTACTA CCGCGATGAT GACGAGTCGG CGCTGCCACG CAATATCGCC
AGCTTCAAGG CGTTCGAGAA CGCCATGGCA CTGGATATCG CCATGGGCGG CTCGTCTAAT
ACCGTATTGC ACCTTTTGGC TGCGGCTCAG GAGGCCAAGG TGGACTTCAC CATGGCCGAT
ATCGACCGCC TGTCCCGTCA GGTGCCGCAC CTGTGTAAGG TGGCGCCGTC GACCCCTAAA
TATCATATGG AAGATGTGCA CCGCGCCGGT GGCGTGATGG GCATCTTAGG TGAGCTGGAC
AGAGCCGGCC TGCTGCATAC GGATGTCAGC CATGTGGCCG GCGAGAACCT CAAGGCGGTG
CTGGTCCAGT ATGACTTGGT TCAGACCCAG GATGAGGCGG TACAGCAGTT CTATGCCGCC
GGTCCTGCCG GCATTCCCAC CACCAAGGCC TTCAGCCAGA GCTGTCGCTG GCCGAGCCTG
GATGTGGATC GCCAAGAGGG CTGTATCCGC ACCCGCGAAT TTGCCTTCAG TCAGGAGGGC
GGCCTGGCGG TACTGTCCGG CAACATCGCG GCCGATGGCT GTATCGTCAA GACCGCCGGG
GTCGATGAGG CTAACCATAC CTTCGTGGGC CATGCCCGCG TGTATGAGAG CCAGGACGAC
GCCGTGGCCG GCATCTTAGG CGGCGAGGTG GTTGCCGGTG ATGTGGTAGT GATCCGTTAC
GAAGGCCCTA AAGGCGGTCC CGGCATGCAG GAGATGCTCT ATCCCACCAG TTACCTGAAA
TCTAAAGGGC TGGGCACCTC TTGTGCGCTT ATCACCGACG GACGCTTCTC CGGTGGCACC
TCTGGGCTCT CTATCGGTCA TGTGTCACCC GAGGCGGCGG CCGGTGGCAC TATCGCATTG
GTGGAAACCG GCGATCGTAT CGAGATCGAT ATCCCTGCAC GCTCTATCAC CCTGGCGGTG
AGCGACGAGG TGCTCGAGAC TCGTCGCCAA GCCATGCAGG CCCGTGGCAA GCAGGCCTGG
AAGCCGGTTA ATCGTGAGCG CAGCGTGTCG CTGGCGCTGA AAGCCTATGC CATGCTCGCC
ACCAGTGCCG ATAAGGGCGC GGTGCGCGAC GTCAGTAAGC TGGAGGATTA G
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| Protein sequence | MAKLRSATST QGRNMAGARA LWRATGVKDS DFGKPIVAIA NSFTQFVPGH VHLKDMGSLV
AGAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKLI KLDLVDAMVA AADDRVSDED
SEKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS LLATHSDRRE LFLEAGRRVM
ALANRYYRDD DESALPRNIA SFKAFENAMA LDIAMGGSSN TVLHLLAAAQ EAKVDFTMAD
IDRLSRQVPH LCKVAPSTPK YHMEDVHRAG GVMGILGELD RAGLLHTDVS HVAGENLKAV
LVQYDLVQTQ DEAVQQFYAA GPAGIPTTKA FSQSCRWPSL DVDRQEGCIR TREFAFSQEG
GLAVLSGNIA ADGCIVKTAG VDEANHTFVG HARVYESQDD AVAGILGGEV VAGDVVVIRY
EGPKGGPGMQ EMLYPTSYLK SKGLGTSCAL ITDGRFSGGT SGLSIGHVSP EAAAGGTIAL
VETGDRIEID IPARSITLAV SDEVLETRRQ AMQARGKQAW KPVNRERSVS LALKAYAMLA
TSADKGAVRD VSKLED
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