| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0272 |
|---|
| Symbol | |
|---|
| ID | 4920772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 289060 |
|---|
| End bp | 289803 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640161796 |
|---|
| Product | cupin 2 domain-containing protein |
|---|
| Protein accession | YP_001092403 |
|---|
| Protein GI | 127511206 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.181215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000021691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC TAAAAATGCT CTTAGGTGTT GCCGCACTGG CTTCAACCAC AGCCGTGGCT
CAAGGCCCGC AATGCAATCA TGCACAGCTG CCATTTCAGC AGATGACGCC AGTGCCTTAC
GACAGCACAC CTTACTCACC ACAGGACACT ATGCCTGAGC AGTGCAGTAA CCCTGAAGTT
GAGGCCTATA TTGCGGATTG GGAAGCGGGC AAGATCGACT TCACCACCAT CAAGGCCAAC
GACAGCATCG CCGCCGATCA GCGTTTCTGC AAGACCCTGG ATGACGATGG CAACATTTCA
GAAGTCAAAG ACTGTGATCG TACTAAGTCA CCCGTTGGTT ACATCTGGAA AGAGCTATCT
GATAGCCCTG TGGTGATTGG TATTACCGAT GGTGGCAAGT CAGACCATGC ACCTCACTTC
CACGGTCAAC CTGAATGTTA CTATGTGGTC AACGGCGAGG GACAAACCCT GGCGGACAAC
CAATTTAAGA AGCTGGGTAC TGGCCAATAC TTCTACATTC CGGGTGCCAC CATCCACAAC
ACGCCTATCA TGTCTGAAAA AGGCCTTGGC GTAATCTATT GGTATCCGAA CAACGCCCAC
TTCGACGGCT TCAAATACTA CTGGCGTAAA GACGTGAAAA ACCTACGCGT TGCCGAAGAA
GCCTTCGACC GCGTAGATGC CATACGTAAG CGCGACCTAA ACTTAGGCCC CTACGGCACC
AACGAAGCCT TCTTCAAGAA ATAG
|
|---|
| Protein sequence | MMKLKMLLGV AALASTTAVA QGPQCNHAQL PFQQMTPVPY DSTPYSPQDT MPEQCSNPEV
EAYIADWEAG KIDFTTIKAN DSIAADQRFC KTLDDDGNIS EVKDCDRTKS PVGYIWKELS
DSPVVIGITD GGKSDHAPHF HGQPECYYVV NGEGQTLADN QFKKLGTGQY FYIPGATIHN
TPIMSEKGLG VIYWYPNNAH FDGFKYYWRK DVKNLRVAEE AFDRVDAIRK RDLNLGPYGT
NEAFFKK
|
|---|
| |