| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0228 |
|---|
| Symbol | |
|---|
| ID | 4924073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 241543 |
|---|
| End bp | 242385 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640161751 |
|---|
| Product | uroporphyrin-III C/tetrapyrrole methyltransferase |
|---|
| Protein accession | YP_001092359 |
|---|
| Protein GI | 127511162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0313] Predicted methyltransferases |
|---|
| TIGRFAM ID | [TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.330626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGT CGGTCGCACT TTACATAGTT CCTACTCCAA TCGGTAACCT TGGAGATATC
AGCAGCCGCG CCCTAGAGGT ATTGAATCAG GTATCCCTTA TCGCCTGTGA GGACACCCGC
CATAGCGGTA AATTGCTGAG CCATTTCGGC ATAGAGACCC GCAAGACGGC GCTGCATGAT
CACAACGAAC GCGACCGGGC TCAGGGGATC ATCCAGAAGC TGGCCAATGG TGAGTCTGTG
GCGCTGATCT CCGATGCCGG TACGCCGTTG ATCTCCGATC CTGGCTATCA TCTGGTGTCA
CAGGTGCGTG AAGCCGGTTT CAAGGTGGTG CCGCTGCCGG GCCCCTGTGC GGCTATCACG
GCGCTGAGCG CCTCTGGGCT GCCGTCGGAT CGCTTCTCGT TCGAGGGCTT TCTGCCCGCC
AAGGAGAAGG GACGTCTCGA TAAACTGACC GAACTGAAAG AAGATCCTCG CACCCTGATC
TTCTACGAGT CGCCACATCG CATCGTTCAC AGCCTAACCT CTATCGTGGC GGCGCTTGGC
GGCGATCGTC AGGTGGTGAT GGCCCGTGAA GTCACCAAGA CCTTCGAGAC CTTCCTCTCT
GGCCCCGCCG CTGAGGTGCT TGCGACAGTG AGTGAGGATC CCAACCAGCA GAAGGGCGAA
ATTGTGCTCA TGTGCCACGG ACATCGCACA GATGAAGATG CCGGCGTGCC CGCCCAGGCG
CTGGAGACGC TAAAGTTACT GAGTCAGGAG CTACCGCTGA AGAAGGCATC GGCGCTGGCG
GCGCAGATCC ATGGGCTGAA GAAGAACGCC CTCTATAAGC TGGGCCTAGA GCTGGATCTC
TAG
|
|---|
| Protein sequence | MDLSVALYIV PTPIGNLGDI SSRALEVLNQ VSLIACEDTR HSGKLLSHFG IETRKTALHD
HNERDRAQGI IQKLANGESV ALISDAGTPL ISDPGYHLVS QVREAGFKVV PLPGPCAAIT
ALSASGLPSD RFSFEGFLPA KEKGRLDKLT ELKEDPRTLI FYESPHRIVH SLTSIVAALG
GDRQVVMARE VTKTFETFLS GPAAEVLATV SEDPNQQKGE IVLMCHGHRT DEDAGVPAQA
LETLKLLSQE LPLKKASALA AQIHGLKKNA LYKLGLELDL
|
|---|
| |