| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0219 |
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| Symbol | |
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| ID | 4923751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 233648 |
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| End bp | 234322 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640161742 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001092350 |
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| Protein GI | 127511153 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0486776 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTCCAT TTCTAATTGC TCCCTCTATC TTATCTGCCG ACTTTGCCCG TCTCGGGGAA
GATGTCGAGG CCGTGCTTAA GGCCGGTGCC GATGTGGTTC ACTTTGACGT GATGGATAAC
CATTATGTGC CTAACCTGAC CATAGGCCCT ATGGTGTGTA AGGCGCTGCG TGATTATGGC
GTGACCGCCG ATATCGACGT GCACCTCATG GTGAAGCCTG TGGATCGCAT CATTCCCGAT
TTCGTCGATG CAGGCGCCTC TATTATCACC TTCCACCCAG AGGCCTCTGA GCATATCGAT
CGCACCCTGC AGCTGATCAA GGAATCTGGC TGTAAGGCTG GCCTGGTCTT CAACCCAGCA
ACGCCGCTGC ACTATCTGGA TCATGTGATG GATAAGTTGG ACGTGATTCT GCTGATGTCG
GTAAACCCAG GTTTCGGTGG CCAGTCATTT ATCCCGTCGA CACTGGATAA ACTGCGTCAG
GTGCGTGAGC GTATCGATGC CAGCGGTTTC GATATTCGCT TAGAAGTCGA CGGTGGCGTT
AAGGTCGACA ATATCGCCGA AATCGCGGCG GCGGGTGCCG ACATGTTCGT GGCCGGCTCG
GCGATTTTCA ATAAGCCAGA CTACAAGGCG GTGATCGACG AGATGCGCAG CGAGCTGGCT
AAGGTCGATG CCTAA
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| Protein sequence | MRPFLIAPSI LSADFARLGE DVEAVLKAGA DVVHFDVMDN HYVPNLTIGP MVCKALRDYG
VTADIDVHLM VKPVDRIIPD FVDAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPA
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRERIDASGF DIRLEVDGGV
KVDNIAEIAA AGADMFVAGS AIFNKPDYKA VIDEMRSELA KVDA
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