Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0193 |
Symbol | |
ID | 4922233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 199263 |
End bp | 201239 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640161712 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001092324 |
Protein GI | 127511127 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF [TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000108567 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0553743 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCTG AATTAGGACA CTTTTCGTTG ATAATAGGAT TGGCATTCGC CTTTCTATTG GCCAGCGTTC CCTTAATCGG TGTTGCTCGC AAAGATCAAT ATCTGGTGCG TTATGCCTGG CCGTTGAGTT ACGGCATGTT TTTCTTTATC GCTCTCTCCG TGATCGTCCT GGGTTATAGC TTTGCCGTCG ACGATTTCTC TGTAGCCTAT GTTGCACACC ACTCAAACTC TCAGCTGCCG ATCTTCTTCA AGATCGCCGC GGTATGGGGT GGTCACGAAG GTTCATTACT CTTCTGGGTG TTTGCCCTGT CTGTCTGGAC GGCATCGGTT GCCTTCTTCA GTAAGGGGTT AGAAGAGGTC TTCACCGCTC GCGTACTCGC TATTCTGGCG ATGATAGTGA TCGGCTTCTG TCTCTTCATG CTGCTGACTT CGAGTCCATT TGAGCGTCTG TTCCCGATTC CTATGGAGGG ACGCGACCTT AACCCAATGC TGCAGGACGT GGGACTCATC TTTCACCCAC CTATGCTGTA CCTGGGCTAT GTTGGTTTCT CGGTGAGCTT TGCCTTCGCC ATCGCCGCGC TCATGGGCGG ACGTCTCGAT TCCGCCTGGG CACGTTGGAG TCGTCCTTGG ACGCTTGCGG CCTGGATCTT CCTGACCGGC GGTATCTCGC TCGGTTCTTG GTGGGCATAT TACGAGCTAG GCTGGGGCGG CTGGTGGTTC TGGGATCCCG TCGAAAACGC GTCATTCATG CCTTGGTTGA TCGGTACCGC ACTGCTGCAC TCAGTGATCG TGACCGAGAA GCGTGCAACC TTCCGTAACT GGACGGTACT GCTTTCTATA TTCGCATTCT CGCTGAGTCT GCTAGGCACC TTTATCGTGC GTTCAGGCGT ACTGACTTCG GTGCACTCAT TCGCGGCGGA TCCTAGCCGT GGTATGTTCA TCCTCTTGCT GCTGGGTCTC GCCATCGGCG GCTCACTGAC GCTGTTTGCC TTCCGCGCAA GCGACATGAA GAGCCCTGCG CGTTTCGAGC TGATGTCGAA AGAAACCATG CTGCTGGTAG GTAACATCCT CCTTACCGTA GCTTGTGGTA CCGTGCTGCT GGGCACACTC TACCCACTGC TGATCGATGC CCTTAACATG GGTAAGATCT CTGTAGGCCC ACCATACTTC AACGCGGTAT TCGTGCCGAT TGCACTCGTG CTGTTTGCCT TCATGGGTAT TGGCCCTAGC ATCCGCTGGA AGCGCGCTAA GGCAGGTGAA CTCAGGGCCA AGCTGCTGGT GCCTGCCATC GTCTCTGCCG TTATCGGTGT GGCGACGCCT TTCCTGGTGG ACGGCAAGTT TAATGCTTGG GTGATGTTCG GTATTGGCCT GGCCGCTTGG GTAACAGTTG CTACGCTGCG CGCCGCCTAC GACATCATGC AGTCTAAAGA TGGCCTGAGC CTGGCGCGTA TGGGGCGCAG TCAGCTAGGT ATGATCATCG CTCACTTAGG TATCGCCGTC TCTGTGGTCG GCGCGACTAT GGTGTCTAAC TACTCGATCG AGAAGAGTGT TCGCATGGGC CCTGGTATCA CCCAGGAACT GGCGGGCTAT AGCTTCCACT ACATCGAGAC CAAGAATGTC GTCGGTCCTA ACTATACCGC CCAGCAGGGT CAGGTCGAAG TGACCAAAGA CGGTGAGTTC ATTACTCTGC TTAAACCTGA TCGTCGTCAG TACAACGTAC GTACCATGGA CATGACAGAG GCGGGCATCG ATTGGGGACT GTTCCGCGAT CTCTATATCA CCATGGGCGA TCCAATCAGC CGCACCGAGT TTGCCGTGCG TCTGAACTAC AAGCCATTCG TGCGCTGGTT ATGGTTCGGT AGCATCTTCA TGATGGTAGG TGGTCTGTTC GCCGCGTCTG ATAAGCGTTA CCGCAGAGCC AAGGCGACCG AAACTGCCGG TGAAAAAGCC AAACAAGCAA AATTAGCAAC CGCATAA
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Protein sequence | MIPELGHFSL IIGLAFAFLL ASVPLIGVAR KDQYLVRYAW PLSYGMFFFI ALSVIVLGYS FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSVWTASV AFFSKGLEEV FTARVLAILA MIVIGFCLFM LLTSSPFERL FPIPMEGRDL NPMLQDVGLI FHPPMLYLGY VGFSVSFAFA IAALMGGRLD SAWARWSRPW TLAAWIFLTG GISLGSWWAY YELGWGGWWF WDPVENASFM PWLIGTALLH SVIVTEKRAT FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASDMKSPA RFELMSKETM LLVGNILLTV ACGTVLLGTL YPLLIDALNM GKISVGPPYF NAVFVPIALV LFAFMGIGPS IRWKRAKAGE LRAKLLVPAI VSAVIGVATP FLVDGKFNAW VMFGIGLAAW VTVATLRAAY DIMQSKDGLS LARMGRSQLG MIIAHLGIAV SVVGATMVSN YSIEKSVRMG PGITQELAGY SFHYIETKNV VGPNYTAQQG QVEVTKDGEF ITLLKPDRRQ YNVRTMDMTE AGIDWGLFRD LYITMGDPIS RTEFAVRLNY KPFVRWLWFG SIFMMVGGLF AASDKRYRRA KATETAGEKA KQAKLATA
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