Gene Shew_0193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0193 
Symbol 
ID4922233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp199263 
End bp201239 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content55% 
IMG OID640161712 
Productcytochrome c-type biogenesis protein CcmF 
Protein accessionYP_001092324 
Protein GI127511127 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1138] Cytochrome c biogenesis factor 
TIGRFAM ID[TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000108567 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0553743 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCCTG AATTAGGACA CTTTTCGTTG ATAATAGGAT TGGCATTCGC CTTTCTATTG 
GCCAGCGTTC CCTTAATCGG TGTTGCTCGC AAAGATCAAT ATCTGGTGCG TTATGCCTGG
CCGTTGAGTT ACGGCATGTT TTTCTTTATC GCTCTCTCCG TGATCGTCCT GGGTTATAGC
TTTGCCGTCG ACGATTTCTC TGTAGCCTAT GTTGCACACC ACTCAAACTC TCAGCTGCCG
ATCTTCTTCA AGATCGCCGC GGTATGGGGT GGTCACGAAG GTTCATTACT CTTCTGGGTG
TTTGCCCTGT CTGTCTGGAC GGCATCGGTT GCCTTCTTCA GTAAGGGGTT AGAAGAGGTC
TTCACCGCTC GCGTACTCGC TATTCTGGCG ATGATAGTGA TCGGCTTCTG TCTCTTCATG
CTGCTGACTT CGAGTCCATT TGAGCGTCTG TTCCCGATTC CTATGGAGGG ACGCGACCTT
AACCCAATGC TGCAGGACGT GGGACTCATC TTTCACCCAC CTATGCTGTA CCTGGGCTAT
GTTGGTTTCT CGGTGAGCTT TGCCTTCGCC ATCGCCGCGC TCATGGGCGG ACGTCTCGAT
TCCGCCTGGG CACGTTGGAG TCGTCCTTGG ACGCTTGCGG CCTGGATCTT CCTGACCGGC
GGTATCTCGC TCGGTTCTTG GTGGGCATAT TACGAGCTAG GCTGGGGCGG CTGGTGGTTC
TGGGATCCCG TCGAAAACGC GTCATTCATG CCTTGGTTGA TCGGTACCGC ACTGCTGCAC
TCAGTGATCG TGACCGAGAA GCGTGCAACC TTCCGTAACT GGACGGTACT GCTTTCTATA
TTCGCATTCT CGCTGAGTCT GCTAGGCACC TTTATCGTGC GTTCAGGCGT ACTGACTTCG
GTGCACTCAT TCGCGGCGGA TCCTAGCCGT GGTATGTTCA TCCTCTTGCT GCTGGGTCTC
GCCATCGGCG GCTCACTGAC GCTGTTTGCC TTCCGCGCAA GCGACATGAA GAGCCCTGCG
CGTTTCGAGC TGATGTCGAA AGAAACCATG CTGCTGGTAG GTAACATCCT CCTTACCGTA
GCTTGTGGTA CCGTGCTGCT GGGCACACTC TACCCACTGC TGATCGATGC CCTTAACATG
GGTAAGATCT CTGTAGGCCC ACCATACTTC AACGCGGTAT TCGTGCCGAT TGCACTCGTG
CTGTTTGCCT TCATGGGTAT TGGCCCTAGC ATCCGCTGGA AGCGCGCTAA GGCAGGTGAA
CTCAGGGCCA AGCTGCTGGT GCCTGCCATC GTCTCTGCCG TTATCGGTGT GGCGACGCCT
TTCCTGGTGG ACGGCAAGTT TAATGCTTGG GTGATGTTCG GTATTGGCCT GGCCGCTTGG
GTAACAGTTG CTACGCTGCG CGCCGCCTAC GACATCATGC AGTCTAAAGA TGGCCTGAGC
CTGGCGCGTA TGGGGCGCAG TCAGCTAGGT ATGATCATCG CTCACTTAGG TATCGCCGTC
TCTGTGGTCG GCGCGACTAT GGTGTCTAAC TACTCGATCG AGAAGAGTGT TCGCATGGGC
CCTGGTATCA CCCAGGAACT GGCGGGCTAT AGCTTCCACT ACATCGAGAC CAAGAATGTC
GTCGGTCCTA ACTATACCGC CCAGCAGGGT CAGGTCGAAG TGACCAAAGA CGGTGAGTTC
ATTACTCTGC TTAAACCTGA TCGTCGTCAG TACAACGTAC GTACCATGGA CATGACAGAG
GCGGGCATCG ATTGGGGACT GTTCCGCGAT CTCTATATCA CCATGGGCGA TCCAATCAGC
CGCACCGAGT TTGCCGTGCG TCTGAACTAC AAGCCATTCG TGCGCTGGTT ATGGTTCGGT
AGCATCTTCA TGATGGTAGG TGGTCTGTTC GCCGCGTCTG ATAAGCGTTA CCGCAGAGCC
AAGGCGACCG AAACTGCCGG TGAAAAAGCC AAACAAGCAA AATTAGCAAC CGCATAA
 
Protein sequence
MIPELGHFSL IIGLAFAFLL ASVPLIGVAR KDQYLVRYAW PLSYGMFFFI ALSVIVLGYS 
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSVWTASV AFFSKGLEEV
FTARVLAILA MIVIGFCLFM LLTSSPFERL FPIPMEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMGGRLD SAWARWSRPW TLAAWIFLTG GISLGSWWAY YELGWGGWWF
WDPVENASFM PWLIGTALLH SVIVTEKRAT FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASDMKSPA RFELMSKETM LLVGNILLTV
ACGTVLLGTL YPLLIDALNM GKISVGPPYF NAVFVPIALV LFAFMGIGPS IRWKRAKAGE
LRAKLLVPAI VSAVIGVATP FLVDGKFNAW VMFGIGLAAW VTVATLRAAY DIMQSKDGLS
LARMGRSQLG MIIAHLGIAV SVVGATMVSN YSIEKSVRMG PGITQELAGY SFHYIETKNV
VGPNYTAQQG QVEVTKDGEF ITLLKPDRRQ YNVRTMDMTE AGIDWGLFRD LYITMGDPIS
RTEFAVRLNY KPFVRWLWFG SIFMMVGGLF AASDKRYRRA KATETAGEKA KQAKLATA