| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0190 |
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| Symbol | |
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| ID | 4922121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 196133 |
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| End bp | 196783 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640161709 |
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| Product | cytochrome c biogenesis protein CcmA |
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| Protein accession | YP_001092321 |
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| Protein GI | 127511124 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
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| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000146102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00172001 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGGTAGAAG AAAAAACAGC AACAACACTG GTATCAGCCG ATAACTTGAC TTGTATCCGC
GAAGAGCGAA TTCTCTTCGA CGAGCTGAGC TTTGATATCC AAGCGGGTGA GATAGTTCAA
ATCGAAGGCC CTAATGGCGC GGGTAAAACC AGCCTGCTGA GGATCCTCGC CGGCCTGTCA
CGTCCCTATG CGGGCGAAGC CAAGTACAAG GGTACTGACA TTACCCGCTG CCGCGACGAA
TACAATGACG ACCTTTTGTA TCTCGGCCAC CTTGCAGGTG TAAAAAGCGA GTTAACCGCC
GAAGAGAATC TTAACTTCAA TTTAAGAATC AGCGGGTATG ATGATTTCGA AACCAACCAG
ATCCTCGCTA AGGTAAACCT GTCTGGCTTC GAAGAGGCTT TGGCCGGCCA CCTGTCGGCG
GGTCAACATC GTCGTACCGC CCTAGCCCGA CTCTGGCATA CCAACTGTAA GGTCTGGCTA
TTGGACGAAC CATTTACTGC AATCGATAAG AAAGGCGTCG AAGAATTGGA ACACCTGTTT
TTACAACATG CTCAAAGCGG CGGTTGTGTC ATCATGACTA CCCACCAGGA CATGAGCATT
ATCGGTGACG ATATTCTCCG TAAGATTCGC CTCGATTACC GCTTTATTTA A
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| Protein sequence | MVEEKTATTL VSADNLTCIR EERILFDELS FDIQAGEIVQ IEGPNGAGKT SLLRILAGLS
RPYAGEAKYK GTDITRCRDE YNDDLLYLGH LAGVKSELTA EENLNFNLRI SGYDDFETNQ
ILAKVNLSGF EEALAGHLSA GQHRRTALAR LWHTNCKVWL LDEPFTAIDK KGVEELEHLF
LQHAQSGGCV IMTTHQDMSI IGDDILRKIR LDYRFI
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