| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0182 |
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| Symbol | rpsD |
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| ID | 4921129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 190770 |
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| End bp | 191390 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161701 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001092313 |
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| Protein GI | 127511116 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000162542 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00157389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC AAAGCTCAAG CTCACTCGCC GAGAAGGTAC TGACCTTTTC
CTGAAAAGCG GTGTGAGAGC AATTGATTCG AAGTGTAAGC TTGAAGCTGC ACCTGGACAA
CACGGCGCTC GTAAAGCTCG TTTGTCTGAG TACGGCGTTC AGCTGCGCGA AAAACAAAAA
GTTCGTCGTA CTTATGGTGT GCTTGAAAAG CAATTCCGTA ACTACTATAA AGACGCTGCA
CGTCTAAAAG GTAACACTGG TGAAAACCTG CTTACTCTTT TGGAAACTCG TTTAGATAAC
GTTGTTTATC GTATGGGTTT TGGTGCTACC CGTGCTGAAG CACGTCAGCT AGTTAGCCAT
AAGTCAATTA TGGTAAACGG CCGCGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTAATTA GCGTTCGTGA GAAGTCTCAA AAGCAAGCTC GTATCAAAGC TGCTCTAGAG
GTTGCTTCTC AGCGCGAAAA GCCAACATGG GTTGAAGTAG ATGCCGCTAA GATGGAAGGT
GCTTTCAAGC GTCTGCCTGA GCGTAGCGAT TTATCTGCGG ATATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LTRREGTDLF LKSGVRAIDS KCKLEAAPGQ HGARKARLSE YGVQLREKQK
VRRTYGVLEK QFRNYYKDAA RLKGNTGENL LTLLETRLDN VVYRMGFGAT RAEARQLVSH
KSIMVNGRVV NIPSFKVSAN DVISVREKSQ KQARIKAALE VASQREKPTW VEVDAAKMEG
AFKRLPERSD LSADINEQLI VELYSK
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