| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0175 |
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| Symbol | rpsE |
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| ID | 4920932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 187237 |
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| End bp | 187740 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161694 |
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| Product | 30S ribosomal protein S5 |
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| Protein accession | YP_001092306 |
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| Protein GI | 127511109 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0098] Ribosomal protein S5 |
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| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000490298 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000558993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCTAAAT TTGAAGCTCC ACAAAAAGAC GATCTGCAAG AGAAGTTAGT TGCAGTAAAT
CGTGTTTCTA AAGTAGTTAA AGGCGGACGT ATCTTTAGCT TCACTGCACT GACTGTAGTG
GGTGACGGTA ACGGTAAAGT CGGCTATGGC TATGGTAAAG CGCGTGAAGT ACCTGCTGCT
ATCCAGAAAG CAATGGAAAA GGCTCGCCGT AACATTGTTT CTGTTGAACT TGTAAATGGT
ACTTTGCACC ACCCTGTTAA GGGCCGTCAC ACTGGTTCGC GTGTTTACAT GCAACCAGCT
TCTGAAGGTA CTGGTATTAT TGCCGGTGGT GCGATGCGTG CCGTATTGGA AGTAGCAGGC
GTTCATAACG TTCTGTCAAA AGCATACGGT TCTACTAACC CGATCAACAT CGTTCGCGCA
ACTGTAGATG CGTTGGTGCA CATGAAGTCA CCAGCTCAAA TCGCAGCTAA GCGTGGCCTG
AATGTTGATG AAATTCGAGG TTAA
|
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| Protein sequence | MAKFEAPQKD DLQEKLVAVN RVSKVVKGGR IFSFTALTVV GDGNGKVGYG YGKAREVPAA
IQKAMEKARR NIVSVELVNG TLHHPVKGRH TGSRVYMQPA SEGTGIIAGG AMRAVLEVAG
VHNVLSKAYG STNPINIVRA TVDALVHMKS PAQIAAKRGL NVDEIRG
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