Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0172 |
Symbol | rpsH |
ID | 4920840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 185929 |
End bp | 186321 |
Gene Length | 393 bp |
Protein Length | 130 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640161691 |
Product | 30S ribosomal protein S8 |
Protein accession | YP_001092303 |
Protein GI | 127511106 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0096] Ribosomal protein S8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000595155 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000051786 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCATGC AAGATCCAAT TGCGGATATG TTAACTCGCA TTCGTAACGG CCAAGCTGCT AACAAAGTAT CAGTATCTAT GCCTTCTGCT AAGCTGAAAG TTGCTATCGC ACAGACGCTT AAAGAAGAAG GTTACATCAC TGACTACACC GTAGCAGGCG AAGCCAAGCC GGTTTTGGAA ATCACTTTGA AGTATTTCCA AGGCCAACCA GTCGTTGAGA CTATCCAGCG CGTAAGTCGT CCTGGTCTTC GTATTTACAA AGGTAAAAAC GATCTACCAA AGGTGATGGG CGGTCTGGGT GTCGCAATCG TGTCCACTTC TAAAGGTTTG ATGACTGATC GTGCCGCCCG CCAACAAGGC ATGGGTGGAG AAGTTATCTG CTACGTAGCA TAA
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Protein sequence | MSMQDPIADM LTRIRNGQAA NKVSVSMPSA KLKVAIAQTL KEEGYITDYT VAGEAKPVLE ITLKYFQGQP VVETIQRVSR PGLRIYKGKN DLPKVMGGLG VAIVSTSKGL MTDRAARQQG MGGEVICYVA
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