Gene Shew_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0172 
SymbolrpsH 
ID4920840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp185929 
End bp186321 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content47% 
IMG OID640161691 
Product30S ribosomal protein S8 
Protein accessionYP_001092303 
Protein GI127511106 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0096] Ribosomal protein S8 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.95155e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.1786e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCATGC AAGATCCAAT TGCGGATATG TTAACTCGCA TTCGTAACGG CCAAGCTGCT 
AACAAAGTAT CAGTATCTAT GCCTTCTGCT AAGCTGAAAG TTGCTATCGC ACAGACGCTT
AAAGAAGAAG GTTACATCAC TGACTACACC GTAGCAGGCG AAGCCAAGCC GGTTTTGGAA
ATCACTTTGA AGTATTTCCA AGGCCAACCA GTCGTTGAGA CTATCCAGCG CGTAAGTCGT
CCTGGTCTTC GTATTTACAA AGGTAAAAAC GATCTACCAA AGGTGATGGG CGGTCTGGGT
GTCGCAATCG TGTCCACTTC TAAAGGTTTG ATGACTGATC GTGCCGCCCG CCAACAAGGC
ATGGGTGGAG AAGTTATCTG CTACGTAGCA TAA
 
Protein sequence
MSMQDPIADM LTRIRNGQAA NKVSVSMPSA KLKVAIAQTL KEEGYITDYT VAGEAKPVLE 
ITLKYFQGQP VVETIQRVSR PGLRIYKGKN DLPKVMGGLG VAIVSTSKGL MTDRAARQQG
MGGEVICYVA