| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0167 |
|---|
| Symbol | rpsQ |
|---|
| ID | 4920870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 183915 |
|---|
| End bp | 184163 |
|---|
| Gene Length | 249 bp |
|---|
| Protein Length | 82 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640161686 |
|---|
| Product | 30S ribosomal protein S17 |
|---|
| Protein accession | YP_001092298 |
|---|
| Protein GI | 127511101 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0186] Ribosomal protein S17 |
|---|
| TIGRFAM ID | [TIGR03635] 30S ribosomal protein S17 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000350413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000281031 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATA AAATCCGTAC TTTGCAAGGT CGTGTACTTA GCAACAAGAT GGACAAGTCT
ATCACTGTAG CTATTGAGCG TAAGGTTAAG CATCCTCTAT ACGGGAAGTT TATCAAGCGT
ACTACTAAGA TCCATGCACA TGACGAAACA AATCAGTGTA ATGCTGGCGA TATCGTGACT
ATTCGCGAAT GCCGTCCGCT GTCTAAGACT AAGTCTTGGA CTCTGGTTGA AGTAGTAACA
AAAGCCTAA
|
|---|
| Protein sequence | MTDKIRTLQG RVLSNKMDKS ITVAIERKVK HPLYGKFIKR TTKIHAHDET NQCNAGDIVT
IRECRPLSKT KSWTLVEVVT KA
|
|---|
| |