| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0159 |
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| Symbol | rplD |
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| ID | 4920649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 180220 |
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| End bp | 180825 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640161678 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_001092290 |
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| Protein GI | 127511093 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000107057 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000448668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGAATTGG TATTGAAAGA CGCACAGAGT GCTCTTGAAG TTTCCGAAAC TACCTTCGGC
CGTGACTTTA ATGAAGCACT GGTTCATCAG GTAGTTGTAG CATACGCTGC AAACGCGCGT
CAGGGTACTC GTGCTCAAAA GACTCGCGCA GAAGTAACTG GCTCTGGCAA AAAGCCATGG
CGCCAAAAAG GTACTGGCCG TGCTCGTGCT GGTACTGTTA AAGGCCCAAT CTGGCGTGGC
GGTGGCGTTT CATTCGCTGC TAAAACCCAA GATCACAGCC AAAAAGTAAA CAAGAAGATG
TACCGCGGAG CGCTTAAGAG CATTCTGTCT GAATTAGTAC GTCAAGATCG TCTTGTTGTT
GTTGAGTCAT TCGGTGTTGA AGCTCCTAAG ACTAAAGAGT TGAAGGCTAA GCTGAAAGAC
ATGAAGCTGG AAGACGTATT AATTGTTACT CCAGAGATTG ACGAGAACTT GTTCTTAGCT
GCACGCAACC TGTACAAAGT TGACGTTCGC GACGTTGCTG GTATCGATCC AGTAAGCCTA
ATCGCGTTCG AAAAAGTACT GGTTACTGCC GATGCTGTTA AGCAAATCGA GGAGATGCTG
GGATGA
|
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| Protein sequence | MELVLKDAQS ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARA GTVKGPIWRG GGVSFAAKTQ DHSQKVNKKM YRGALKSILS ELVRQDRLVV
VESFGVEAPK TKELKAKLKD MKLEDVLIVT PEIDENLFLA ARNLYKVDVR DVAGIDPVSL
IAFEKVLVTA DAVKQIEEML G
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