| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0148 |
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| Symbol | |
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| ID | 4922431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 163857 |
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| End bp | 164558 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640161667 |
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| Product | ribosomal protein L1 |
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| Protein accession | YP_001092279 |
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| Protein GI | 127511082 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000518131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0355944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAAGC TAACTAAACG CGCGCGTTTG ATCCGCGAGA AAGTAGAAGC GACTAAGAGC
TACGACATCA ACGAAGCTGT TGCACTACTG AAAGAACTAG CTACTGCTAA GTTCGTTGAA
AGTGTTGACG TTGCGGTTAA CCTAGGTGTT GACCCACGTA AATCAGACCA AAACGTTCGT
GGCGCGACTG TTCTGCCACA CGGTACTGGT CGTGAAGTAC GTGTTGCTGT GTTTACTCAA
GGTGCTAACG CTGACGCCGC TAAAGAAGCC GGTGCTGAGC TAGTTGGTAT GGACGAGCTT
GCTGCACAAG TTAAAGCTGG TGAAATGAAC TTCGACGTAG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTCAGTT AGGCCAAATC CTGGGCCCAC GTGGTCTGAT GCCTAACCCT
AAGACTGGCA CTGTAACGCC AAACGTTGCT GAAGCTGTTA AGAACGCTAA AGCTGGTCAG
GTTCGTTACC GCAACGACAA GAACGGTATC ATCCACACTA CCATCGGTAA AGTGGACTTC
GAACCAGTTC AACTGAAAGA AAACCTAGAC GCTCTGCTAG GCGCGCTTAT CAAAGCTAAG
CCAGCTGCAG CGAAAGGCGT TTTCGTTAAG AAAGTAAGCA TCTCTACCAC TATGGGTGCA
GGTGTTGCGG TTGATCAGAG CACTCTGAAC CCAACTGCTT AA
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| Protein sequence | MAKLTKRARL IREKVEATKS YDINEAVALL KELATAKFVE SVDVAVNLGV DPRKSDQNVR
GATVLPHGTG REVRVAVFTQ GANADAAKEA GAELVGMDEL AAQVKAGEMN FDVVIASPDA
MRVVGQLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF
EPVQLKENLD ALLGALIKAK PAAAKGVFVK KVSISTTMGA GVAVDQSTLN PTA
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