Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0139 |
Symbol | |
ID | 4922355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 149128 |
End bp | 149928 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640161650 |
Product | glutamate racemase |
Protein accession | YP_001092270 |
Protein GI | 127511073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0796] Glutamate racemase |
TIGRFAM ID | [TIGR00067] glutamate racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000684264 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0718658 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCAGCAA ATATACTCGT GTTCGATTCC GGGGTAGGCG GCCTGTCGAT ATTGGCGGCG GTGCGAGAGC AGCTTCCCAG TGCGAACTAC TGTTATCTGT TTGACAATGC CAGGCTACCC TATGGCGAAC TTGACGAGCA GGAGCTGATC CAAGGTTGCG TGACCTTAAT TAGTCAGGCG GTTATTCAGT GCCAGGCTGA TATCGTGGTC GTGGCCTGTA ACAGTGCCAG CACACTCATA TTGCCAGCGT TAAGAGCCTG CCTGAAGGTG CCCGTGGTGG GCGTCGTTCC GGCTATCAAG CCCGCGGCGG CGTTATCACA GAAGAAACAC CTTGGGCTAT TGGCAACGCC CGGTACTGTC AATCGCCAAT ACACCCAAGA TCTTATCGAT CAGTTTGCCA GTGATTGTCG CGTGGACAGA TTTGGCTCCT CCGAGCTGGT CTATCTGGCC GAGGATAAGA TGGCGCAGCG GCCTGTGGAT AGCGAGGCTC TGCATCGTAT CCTTGCACCA ATCAAAGCAT CCGGGTTAGA CACCCTGATC CTCGGCTGTA CTCACTTTCC GATTCTAAGA GAGGAGCTGC AAAGCTACTT GGGTGAGGGC GTGCATCTAT TAGATTCATC CAACGCTATT GCGGCCAGGG TGGTGAGCCT GCTCGAGCCG AGCATGAGTG GAGAGATAGG TAAGAGTCAG GCACTTTACA CGACAGATAG TATTTGCGAG GGATTAAGGA AGACCTTAGC TGCCTGGGGA TTCAGATCGG CTACCGCCTT TCGCGATAGC CTGATGCCAA TAGGCAGCTA G
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Protein sequence | MSANILVFDS GVGGLSILAA VREQLPSANY CYLFDNARLP YGELDEQELI QGCVTLISQA VIQCQADIVV VACNSASTLI LPALRACLKV PVVGVVPAIK PAAALSQKKH LGLLATPGTV NRQYTQDLID QFASDCRVDR FGSSELVYLA EDKMAQRPVD SEALHRILAP IKASGLDTLI LGCTHFPILR EELQSYLGEG VHLLDSSNAI AARVVSLLEP SMSGEIGKSQ ALYTTDSICE GLRKTLAAWG FRSATAFRDS LMPIGS
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