Gene Shew_0114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0114 
Symbol 
ID4922592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp126918 
End bp127280 
Gene Length363 bp 
Protein Length120 aa 
Translation table11 
GC content56% 
IMG OID640161625 
Productresponse regulator receiver protein 
Protein accessionYP_001092245 
Protein GI127511048 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGA TACTCGCAGT AGATGATTCA GCCTCCATGC GTCAGATGGT GGGCTTTACC 
CTCAAGACGG CGGGATTCGA TGTGACCGAA GCCTGCAACG GTGACGAGGC GCTGACCCAG
GCGAAGAGCC AGGACTATGA CCTGGTGATC TCAGACGTCA ACATGCCAGT GATGGACGGC
ATCACCTTGA TCCGCAACCT ACGCAGCCTG CCCAACTATA AGTTCACCCC TCTACTGATG
CTGACCACAG AATCGGGCAG CGAAAAGAAG CAGGAGGGAC GCTCGGCCGG TGCCACCGGC
TGGATAGTCA AACCCTTTAA CCCCGACCAG CTGCTTGCCA CGGTCAACAA GGTGTTACGT
TAA
 
Protein sequence
MKKILAVDDS ASMRQMVGFT LKTAGFDVTE ACNGDEALTQ AKSQDYDLVI SDVNMPVMDG 
ITLIRNLRSL PNYKFTPLLM LTTESGSEKK QEGRSAGATG WIVKPFNPDQ LLATVNKVLR