| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0103 |
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| Symbol | |
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| ID | 4923083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 112185 |
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| End bp | 113408 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161614 |
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| Product | sodium/glutamate symporter |
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| Protein accession | YP_001092234 |
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| Protein GI | 127511037 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0786] Na+/glutamate symporter |
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| TIGRFAM ID | [TIGR00210] sodium--glutamate symport carrier (gltS) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.406513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACTG TTTATACCGT TGGAGAGCTG GAGTCATTTC TAGTGGCGAT CTTAGTGCTC
TTTATTGGCC ATTCGGTTAA TCGTCACGTG GCATCGTTTC GTAAATATAA TATTCCCGAA
CCCATAGTGG GTGGTCTGCT GGTGGCGGCG GTGATCACCA TATTGCACTC TTACAATATC
TCGCTTGAGT TTTCTCTGTC GATGCAAAAC ACCCTGATGC TGATGTTCTT CAGCAGCGTG
GGGTTGGCGG CCAGCTACAA GCTATTGATG AAGGGGGGCA GCAAGGTATT CCTCTTCCTG
GCGATCGCCT CGCTCTACAT CATCATTCAG AATGCCGTCG GCGTCAGCAT GGCGACCGCA
CTGGGGCTGG AGCCATTGAT GGGACTGATC GCCGGGTCGA TCACCCTGTC AGGCGGGCAC
GGCACGGGAG CGGCCTGGGC ACAGACCTTC TCGGATCAAT ACGGCATCAA CACCCTGGAG
CTGGCGATGG CGGCGGCGAC CTTCGGCCTG GTGATGGGCG GCATCATAGG CGGCCCGGTA
GCTCAGCGTC TGATCAATAA GAATGGCCTG CTATCCTCTT ACGGTGTCGG GGGGAATCAC
CACAAGGACC ATCCTGACTT GGTGACCTAC GACCAGCTGG AAGAAGACAG GGTAACGGCC
AAGAGTATCC TGGAGGTGCT CTTCATTCTT CTACTGTGTG TCGCCGGTGC CAAGTGGTTT
GGCTCTTTGA TCGCCTACCT GGATATCGGC TGGTTGAAGA TGCCTGACTT TGTCTATGCG
CTCTTCTTCG GTGTGGTGAT CACTAACATC ACAGAGGTAT CCCGTGGCTT TAAGATCAAC
CGTGAGTGTG TCGACGTCCT GGGTACCGTC TCGCTGGCGC TCTTCCTTGC CATGGCACTG
ATGAACCTCA AGCTGTGGGA GATCTTCGAC CTGGCAGTGC CGCTGCTGAT CATACTCCTG
GTGCAGACGG CCGTGCTGGC GGTATTTGCC TACTGGGTCA CCTTCAAGCT GATGGGTGCC
AATTATGACG CCGCTGTCAT GGCAGGTGGT CACTGTGGTT TCGGCCTGGG CGCCACACCG
ACGGCCGTGA TGAACATGGG CGCCCTGGTG TCGCGCACGG GTCCATCGCC GCAGGCCTTC
ATGGTGGTGC CTATCGTCGG TGCCTTCTTC ATCGACATAG TCAATGCCAT CATATTGCAG
GGCTATCTCA GCTTTATCGG TTAG
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| Protein sequence | MNTVYTVGEL ESFLVAILVL FIGHSVNRHV ASFRKYNIPE PIVGGLLVAA VITILHSYNI
SLEFSLSMQN TLMLMFFSSV GLAASYKLLM KGGSKVFLFL AIASLYIIIQ NAVGVSMATA
LGLEPLMGLI AGSITLSGGH GTGAAWAQTF SDQYGINTLE LAMAAATFGL VMGGIIGGPV
AQRLINKNGL LSSYGVGGNH HKDHPDLVTY DQLEEDRVTA KSILEVLFIL LLCVAGAKWF
GSLIAYLDIG WLKMPDFVYA LFFGVVITNI TEVSRGFKIN RECVDVLGTV SLALFLAMAL
MNLKLWEIFD LAVPLLIILL VQTAVLAVFA YWVTFKLMGA NYDAAVMAGG HCGFGLGATP
TAVMNMGALV SRTGPSPQAF MVVPIVGAFF IDIVNAIILQ GYLSFIG
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