Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0099 |
Symbol | |
ID | 4923300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 110231 |
End bp | 110905 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161610 |
Product | pseudouridine synthase Rlu family protein |
Protein accession | YP_001092230 |
Protein GI | 127511033 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000500513 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTACAAGA TCATTGCCGA CGAGACCGAC TTTCTGGTGA TCGACAAGGC GCCGGGCGTT CATTTTCACA GCCAGGACGG TAGCGCCGGC GTGATGGCGC AGCTGGAGAG TGATCTCGAT ATCAAGCTCT ATTCTGTGCA TCGCCTGGAT ACCATGACAT CTGGCCTGCT GCTGTTTGCC AAGTCGAGCG AGGCGGCGGC AGCTTTTACC CAGCGCTTTA GCGAACACAA GGTGCAGAAG TACTATCTGG CGCTGGCCAA GGGCAAGCCG AAGAAGAAGC AGGGCAGTAT AGTGGGTGAC ATGGCCAAGT CCCGTCGCAG CATGTACAAG CTGCTGCGCA GCAAGGAGAA TCCGGCGATC ACCCAGTTTT TCTCTCAGTC GGTGGCCGAG GGGCTGCGCC TCTATCTGCT TAAGCCGCTG AGTGGCAAGA CACACCAACT CAGGGTGGCG CTGGCCAGCC TTGGGGTGCC GATTCTCGGT GACCAACTCT ATGGTGGCGA GGATGCCGAC CGTGGCTACC TGCATGCCTA TGCCTTAGGC TTTGAGTGGC AGGGGCAGGC GTATGCCTAT CATCAGGCCC CGGAGCAGGG CGAGGCATTT AGCCTGGATG GGGTAAAAAA CCAGTTGCAA ACATGGAGTA AGCCTGAGAA GTTAGATTGG CCAAAACGAA ATTGA
|
Protein sequence | MYKIIADETD FLVIDKAPGV HFHSQDGSAG VMAQLESDLD IKLYSVHRLD TMTSGLLLFA KSSEAAAAFT QRFSEHKVQK YYLALAKGKP KKKQGSIVGD MAKSRRSMYK LLRSKENPAI TQFFSQSVAE GLRLYLLKPL SGKTHQLRVA LASLGVPILG DQLYGGEDAD RGYLHAYALG FEWQGQAYAY HQAPEQGEAF SLDGVKNQLQ TWSKPEKLDW PKRN
|
| |