Gene Shew_0096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0096 
Symbol 
ID4921540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp107692 
End bp108228 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content53% 
IMG OID640161607 
Producthypothetical protein 
Protein accessionYP_001092227 
Protein GI127511030 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000129427 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCGTT GGTTTATCAG TTTAATGCTG TTGTCTGGAC TGGCGGGGGT GAATGCGGCC 
CAGGCCAATC CGGCAGTGCT TGAGTTGCTA TCGGATAGCC AAAGCCTGAC TCCACAGAAG
ATGATCCTGC AGGCGGAGAA GAGCTACCCT GGGGTGATAT CCGAGTTTCA GATCGATGTG
GAAAATGGTC AGTTGATCTA TGAGATCAGC ATGATCAACA CCAAGGACGA CACCATCAGC
GAATTTGAGT TTTGGGCGAA AGATGGCCGA CTCATTCGCC AGAAGGTGGA GGCCCTCGAG
GCCGACGATA AGGATGAGCT CAAGGCGGTG CGCCTGCTCA AAGAGATGGA GCAGAGCTTC
TCGCAACTGC TTAAGCTCGC CATGGGTGAC AGCAACGCCC ATATTCTCGA GGCGCAGCTG
GATCACGACC TGGGCATCAG CTACTTGGAA CTCAAGCTTA TCGATGCCAA CGGCAAACAT
AAGATAGCCT TCGATATCGA AAATCAGCGG CCTTTGCCCC TGTTGAAGTG GGATTAA
 
Protein sequence
MARWFISLML LSGLAGVNAA QANPAVLELL SDSQSLTPQK MILQAEKSYP GVISEFQIDV 
ENGQLIYEIS MINTKDDTIS EFEFWAKDGR LIRQKVEALE ADDKDELKAV RLLKEMEQSF
SQLLKLAMGD SNAHILEAQL DHDLGISYLE LKLIDANGKH KIAFDIENQR PLPLLKWD