Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0096 |
Symbol | |
ID | 4921540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 107692 |
End bp | 108228 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640161607 |
Product | hypothetical protein |
Protein accession | YP_001092227 |
Protein GI | 127511030 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000129427 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCGTT GGTTTATCAG TTTAATGCTG TTGTCTGGAC TGGCGGGGGT GAATGCGGCC CAGGCCAATC CGGCAGTGCT TGAGTTGCTA TCGGATAGCC AAAGCCTGAC TCCACAGAAG ATGATCCTGC AGGCGGAGAA GAGCTACCCT GGGGTGATAT CCGAGTTTCA GATCGATGTG GAAAATGGTC AGTTGATCTA TGAGATCAGC ATGATCAACA CCAAGGACGA CACCATCAGC GAATTTGAGT TTTGGGCGAA AGATGGCCGA CTCATTCGCC AGAAGGTGGA GGCCCTCGAG GCCGACGATA AGGATGAGCT CAAGGCGGTG CGCCTGCTCA AAGAGATGGA GCAGAGCTTC TCGCAACTGC TTAAGCTCGC CATGGGTGAC AGCAACGCCC ATATTCTCGA GGCGCAGCTG GATCACGACC TGGGCATCAG CTACTTGGAA CTCAAGCTTA TCGATGCCAA CGGCAAACAT AAGATAGCCT TCGATATCGA AAATCAGCGG CCTTTGCCCC TGTTGAAGTG GGATTAA
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Protein sequence | MARWFISLML LSGLAGVNAA QANPAVLELL SDSQSLTPQK MILQAEKSYP GVISEFQIDV ENGQLIYEIS MINTKDDTIS EFEFWAKDGR LIRQKVEALE ADDKDELKAV RLLKEMEQSF SQLLKLAMGD SNAHILEAQL DHDLGISYLE LKLIDANGKH KIAFDIENQR PLPLLKWD
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