| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0053 |
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| Symbol | |
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| ID | 4923686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 64717 |
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| End bp | 65562 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161565 |
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| Product | formate dehydrogenase, subunit FdhD |
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| Protein accession | YP_001092185 |
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| Protein GI | 127510988 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1526] Uncharacterized protein required for formate dehydrogenase activity |
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| TIGRFAM ID | [TIGR00129] formate dehydrogenase family accessory protein FdhD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGTT TTAAACACCC CACACTGGTC AAGACCCAAG CCGATGCCCC GCTCACCATG
GCGGTGAAAG CCATCAACGA GCAGGGCGAA GTGGTCGACA AATATATCGC CTGCGAGCGC
CCCCTCACCC TCTATCTAAA CTGGCGCCCC ATAGTGACCC TGATGACACT GGGTGCCCGT
CCCGAAGCGC TGGCACTGGG CTATTTGAAG AACCAGGGCT TCATCAGCGA CGTCCATCAG
CTCGAGTCTG TGATTGTGGA TTGGGAGGTT AACTCGGCGG CGGTGATCAC CAAGGAGTCG
ACGGCGCACC TGGAGGAGAA ACTGGCGGAG AAGACAGTCA CCACAGGTTG CGGCCAAGGC
ACTGTCTATG GCGGCTTCAT GGATGGCGTC GAGGATATTC GCCTGCCCAC GCCGCAGCTG
AAACAGAGCA TGCTCTACAG CCTGCTCAAC AACATCAGCG CCTACAACGA GACCTATAAG
AATGCAGGTG CCGTGCATGG CTGTGGCCTG TGCGAGGGCG ATCAGATCAT CGGCTTCGTC
GAAGATGTCG GTCGTCACAA CGCGGTCGAC ACCCTCGCCG GCGAGATGTG GCTCAAGCAG
CAGGGCGGCG GCAACAAGCT GTTTTACACC ACGGGACGAC TCACCTCAGA GATGGTGATC
AAGGTGGCCA AGATGGGCAT CCCCGTCCTG CTTTCGCGCA GCGGTGCCAC CCAGATGGGG
CTGGAACTGG CCCAGAAGCT AGGGATCACC ATGATCGCCC GTGCCAAGGG GCGCCACTTC
CTCATCTATC ATGGTGCGGA AAATATCGAA TTTGATGCCA CACCGCCGAA ACGTAACCTA
GGTTAA
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| Protein sequence | MTSFKHPTLV KTQADAPLTM AVKAINEQGE VVDKYIACER PLTLYLNWRP IVTLMTLGAR
PEALALGYLK NQGFISDVHQ LESVIVDWEV NSAAVITKES TAHLEEKLAE KTVTTGCGQG
TVYGGFMDGV EDIRLPTPQL KQSMLYSLLN NISAYNETYK NAGAVHGCGL CEGDQIIGFV
EDVGRHNAVD TLAGEMWLKQ QGGGNKLFYT TGRLTSEMVI KVAKMGIPVL LSRSGATQMG
LELAQKLGIT MIARAKGRHF LIYHGAENIE FDATPPKRNL G
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