| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0048 |
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| Symbol | |
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| ID | 4922898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 58313 |
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| End bp | 59020 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161560 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001092180 |
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| Protein GI | 127510983 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAA CCATACTCAT CACAGGCGTA GGCAAGCGTA TCGGCCTCTA TCTGGCCGAG
GCCTTTCTCA CCCGCGGATA CAAGGTGATA GGCACCTATC GCAGCCACTA CCCCAGCATA
GATGCCCTCA CCAAACTGGG CGCCGACCTC TACCCCTGTG ACTTCACCGT TCAAAGCCAG
CTCGAAGAGC TTATCCAGAC GCTAAAGCAG AACTATCGTC AGCTGGATGC GGTGATCCAC
AACGCCTCGC TCTGGCTAGA TGACAATGAC CCAGCGGGCG CCGATCAGGT GATCGCCCAG
ATGATGCAGG TCCATGTCTA TGCGCCCTAC CAGCTCAACC TCGCCCTCAC GCCGCTACTG
CAAAACCAGC AGGCCATGAC AGACATCATC CATATCACCG ACTATGTGGC GCAGAAAGGC
AGCAAGAAGC ATATCGCCTA CGCCGCCAGC AAGGCCGCGC TGGAAAACAT GACCCTCTCC
TTCGCCGCCA AGTTGGCCCC AAAGGTGAAG GTCAACGCCA TCGCCCCGGC GCTGATCTGT
TTCAACGAGC ATGACGATGC CGCCTATCGC GAGAAGGCCA GGGCCAAGTC GGTATTAGCC
AGAGAGGGCG GCGAAGTCGA AGTGCTGCAG GCGATAGACT ACCTGATGCA GAGCCAGTAT
GTGACGGGGC GTTCCCTGGC ATTGGATGGT GGCCGGCAGC TGAAATAG
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| Protein sequence | MQKTILITGV GKRIGLYLAE AFLTRGYKVI GTYRSHYPSI DALTKLGADL YPCDFTVQSQ
LEELIQTLKQ NYRQLDAVIH NASLWLDDND PAGADQVIAQ MMQVHVYAPY QLNLALTPLL
QNQQAMTDII HITDYVAQKG SKKHIAYAAS KAALENMTLS FAAKLAPKVK VNAIAPALIC
FNEHDDAAYR EKARAKSVLA REGGEVEVLQ AIDYLMQSQY VTGRSLALDG GRQLK
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